KEGG   Typha angustifolia (narrow-leaf cattail): 140764903
Entry
140764903         CDS       T11061                                 
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:tang00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tang03021]
    140764903
   03036 Chromosome and associated proteins [BR:tang03036]
    140764903
Transcription machinery [BR:tang03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     140764903
Chromosome and associated proteins [BR:tang03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     140764903
    SLIK complex
     140764903
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HTH_CHD1_Hrp3 Chromo CHD1-like_C HDA2-3 ResIII DEAD Chromo_MIT1
Other DBs
NCBI-GeneID: 140764903
NCBI-ProteinID: XP_072959843
LinkDB
Position
8:join(1579263..1579860,1580004..1580071,1583644..1584075,1584991..1585215,1585349..1585432,1586672..1586731,1586836..1586939,1587557..1587608,1589441..1589504,1595471..1595564,1595656..1595743,1595845..1595979,1597001..1597192,1597290..1597357,1597642..1597735,1597864..1597988,1598072..1598135,1599371..1599583,1600494..1600736,1600890..1601000,1601107..1601196,1601398..1601580,1601667..1601747,1601880..1602122,1602628..1602783,1602877..1603054,1603135..1603316,1604985..1605335,1605423..1605513,1605858..1606351)
AA seq 1720 aa
MAFFRNFGNKMESGTDLNEKADDSVAGGAYVSVGNTNVDLNSSNQSDDDQFDSTWQQTGN
LDPNAIEKAPSGMWGSNFWKDCQPTWDSAEIRDDGDKGEGPSEANSSEYLDGRKDDEWPK
KGHVDVPADDMLSDDYYEQDGEDQSDSLHLSGPSRPGNSGSRLPAKQTSVSKTMSKRSKA
VKYDEYAEDEDYDEEDEEEEDDPDDADFEPDFGESGKGAKKKGKMSESDYFDEDDEDEDL
DLLDEDDIGFTENCSRTVRRKLARNLKPKERKSSVHGRRKRGRSFSDEESLSGEESDHDS
DEDLYHKPKRMLQQRKKNVSRTDVSLNANSHGSELRTSGRSVRKISYAESEESEDAGEEK
LNKSQKDDVEEDDSDTIERVLWHQAKGMSEEAIRRNQSTQPSVVSTLYDSDPEWNEVEFY
IKWKGQSYLHCQWKSFSDLQTLTGFKKVLNYIKRVTEESKYKRALSREEVEVHDVSKEME
LDLLKQYSQVERIFADRISKIGGDDVVPEYLVKWQGLSYAEATWEKDTDIAFAQDAIDEY
KAREAATSVQGKMVDFQRKKSKASLRKLDEQPEWLKGGKLRDYQLDGLNFLVNSWRNDTN
VILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAREFRKWLPEMSIVVY
VGNRASREVCEQYEFYTNKKSGRHIKFDALLTTYEVILKDKAVLSKIRWNYLMVDEAHRL
KNCEASLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPEKFNNKDDFVDRYKNLS
SFNEIELANLHKELRPHILRRVIKDVEKSLPPKIERILRVEMTPLQKQYYKWILERNFHN
LNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTGVGDSSKVERIVLSSGKLVI
LDKLLIRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNA
PGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRF
VTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGTSMFDKNELSAILRFGAE
ELFKEEKNDDESKKGLESMDIDEILERAEKVESKAIEGETGNELLSAFKVANFGNAEDDA
TFWSRLIQPEAADQADEALAPRAARNTKSYAENNVQEKSTGRKKRATESRDKAQKRSSKY
SDALVYSLPVIEGAAAHVREWSFGNLSKKDASHFVRTVKRFGNPSQIGSIVAEVGGIIET
APSEAQIELFELLIDGCQEAVRGGNMDVKGTLLDFFGVPVKAYEVLDRIEELQLLAKRIG
RYKDPFKQFRLITQHKSPQWSKSCGWNAVDDARLLLGIHYHGYGNWEKIRLDTRLGLTRK
IAPVTLGERETFLPRAPNLDNRASALLQKEFASINGKSSKVKGSRKSSKSGGENISRVGG
SQQRDLNTKVGLPKIDSRKDQLQKHQRVEPEMKEEGEISDTEQYRPPPDKEEKWIGWCAV
VMEDEEETLKRLERLQTTSVDLPKEKVLSRIRKYLQLVGRKIDKIVQQHAASHKQHRMTR
RLWNYVSTYSNLSGERLYDIYSKLKEEQMEVGVGTAHFNSFAPGPSDRDGDASQFPHFYS
DYHRKPRPYQHLSVPSESYHKNQNTGKSESWKRRKRSDPDDHFQNQPYQQINIANGNRVP
EPSNSAGILGWGPVEMRRYGNERPNKAHTGRFFPGQGHLS
NT seq 5163 nt   +upstreamnt  +downstreamnt
atggcattctttaggaactttgggaacaagatggagtctggtactgacttaaatgagaaa
gcagatgatagtgtagccggcggagcttatgtttctgtagggaatacaaatgtcgatctg
aattctagtaatcagagcgatgatgatcagtttgatagtacttggcagcagactggtaat
ttggatcctaatgccattgagaaggcaccttctggaatgtggggttcaaatttttggaag
gactgccagccgacctgggattctgcagaaatacgtgatgacggtgataagggcgagggt
ccctctgaagctaattcttctgaatatttggatgggcgtaaagatgacgaatggcctaag
aaaggccatgtcgatgtccctgcagatgatatgctgtctgatgattattatgagcaggac
ggtgaagatcaaagtgactcgttgcatctcagtggaccaagtcgcccaggcaattctggt
tcgagattaccagcaaagcaaacttctgtttcaaaaactatgtcaaagcgttcaaaagcc
gtgaagtatgatgaatatgctgaggatgaggattatgatgaagaagatgaggaagaagag
gatgatccagatgatgctgattttgagccagactttggcgaatcaggcaagggtgcaaag
aagaagggcaaaatgtctgaaagtgattattttgatgaggatgacgaggatgaggatctt
gatttattggatgaagatgatattggctttacagaaaattgcagtcgtacagtgcgtcgt
aaacttgcacgaaatctaaagcctaaagaaaggaagtcctctgtgcatggtcgaagaaag
cgtgggagatcattttcagatgaggaatctttatcaggggaggagtcagatcatgatagt
gatgaagacctttaccataaaccaaagagaatgttgcagcaacgcaagaagaatgttagc
agaacagatgtgtcattaaatgcaaattcgcatggcagtgagcttcgtacatctggcaga
tctgtgagaaagatctcatatgctgaaagtgaggaaagtgaggatgctggtgaagaaaaa
ttaaacaagtcacagaaggatgatgttgaggaggatgacagcgacacaattgaaagggtg
ctttggcaccaggcaaagggtatgtctgaagaagctataaggaggaaccaatcaactcaa
cctagtgtggtgagcaccttgtacgattcagatcctgagtggaatgaagtggagttttat
ataaaatggaagggccagtcttacctacactgtcaatggaaatcattctctgatctccaa
actcttactggattcaaaaaggttctgaactacattaaaagagtgactgaagaaagcaag
tacaaaagggccttatcacgtgaggaggttgaggttcatgatgtgagcaaggaaatggag
ctggacctgcttaagcaatacagccaggtggaaagaatatttgcagatagaatcagtaaa
attggtggcgatgatgtggtacctgagtatttagtgaagtggcaaggactctcttatgcg
gaagcaacctgggaaaaagatactgacattgcatttgcacaggatgcaattgatgaatac
aaggcccgtgaagctgctacgagtgtacaaggaaagatggttgattttcagcggaagaaa
agcaaagctagtttgcgaaaacttgatgaacaacctgaatggctgaaaggaggtaaactt
cgtgattatcagcttgatggcttgaattttcttgttaacagttggagaaatgacacaaat
gtaattttagctgatgaaatgggtcttggtaaaacagttcagtcggtttcaatgctaggt
tttctgcagaatgctcaacaaattcatgggccttttcttgtggttgtaccactatctacg
ttatcaaattgggctagagaattcagaaaatggcttcctgaaatgagtatagtagtatac
gttggaaatcgtgctagcagagaggtctgtgaacagtatgaattttatacaaacaagaag
agtggaagacacataaaatttgatgcattactaactacatatgaagtgatattgaaggat
aaagctgtattatctaagattaggtggaactatctaatggttgatgaagctcaccgacta
aagaattgtgaagcatctctatatacaactctttcagaattcagcaccaagaacaagctt
cttatcactggaacgcctttgcaaaacagtgtcgaggagctatgggcccttcttcatttc
cttgatccagagaagttcaacaataaggatgattttgttgatagatacaagaatttgagt
tcatttaacgagatcgagcttgctaatcttcacaaggaattgaggccacacattctccga
agagtcataaaggatgtggagaagtccttgcctccaaaaattgagcgtattcttagggtt
gaaatgactcccctacagaaacagtactacaagtggattttagagcgtaactttcacaat
ctcaacaagggtgttcgtggcaatcaggtttcgctgttaaatattgttgttgagttgaag
aaatgctgcaatcatcctttcttatttgaaagtgcagatcatggttatggtggtgatact
ggcgtcggcgatagtagtaaggttgagcgcattgttttgagcagtggaaagctagttata
cttgacaaattactgattaggttgcgtgagacgaagcaccgtgttcttatattttctcag
atggttaggatgctggacatccttgcggagtatttatcacttaggggattccagtttcag
aggcttgatggtagtactagagctgatcttcgtcaccaggcaatggaacatttcaatgct
ccgggaagtgatgatttttgtttccttctctcaacacgtgctggtgggcttggcatcaat
cttgctactgcagatactgttatcatattcgactcagactggaatcctcagaatgacttg
caggcaatgagtagggcgcataggattggtcaacaagaagttgtcaacatctaccgtttt
gtcactagcaagagtgttgaggaggatatcttggagcgcgccaagaaaaagatggttctt
gatcacctagttatccagaagctaaatgctgagggcaggcttgagaagaaagaagctaaa
aagggcacttccatgtttgacaaaaatgaactttctgctatattgaggtttggagcagag
gagttgttcaaggaagaaaagaatgatgatgagagtaagaagggacttgaaagtatggat
attgacgaaattcttgagagggctgaaaaagtggaatctaaagcaattgaaggggagact
ggaaatgaattgctaagcgctttcaaggttgctaactttgggaatgctgaagatgatgct
acattttggagtcggttgatacaaccagaagctgcagatcaagctgatgaagccttagca
cctcgtgctgccagaaatactaagagctatgccgaaaacaatgtacaagagaaaagtacg
ggccggaaaaagagggcaactgaatctcgagataaagctcagaagcgttccagcaaatat
tctgacgctctggtttattcattaccagtgattgagggggcagctgctcacgtaagagaa
tggtcttttgggaacttatcaaaaaaagatgcttcacattttgttcgcacggtcaagaga
tttggaaatccaagtcaaattggctcaattgtggctgaagttggtggtataattgagaca
gcaccttctgaggcccagattgagctgtttgagttgttgattgatggatgccaagaagca
gtaagaggcggaaatatggatgttaagggaactctactggatttttttggtgtacctgta
aaggcctatgaagtactagatcgcatagaggaacttcagcttttggcgaagcgcattgga
cgatacaaagatccttttaaacagtttcgtttaattacacaacataaaagtccacagtgg
tccaaaagctgtggttggaatgcagttgatgatgcaagattgcttcttgggatacattat
catggatatggaaattgggaaaagataaggttggacaccaggcttggtcttacaaggaag
attgctccagtaacactaggtgaaagggagacctttttaccacgggctcctaacttggac
aatcgtgctagtgctcttcttcaaaaggagtttgcaagcattaatggcaagagctccaaa
gttaaaggttctcgtaagtcttctaagagtggaggagaaaatatatcaagggtaggtggt
agccaacaaagggatctaaatacaaaagttggcttgcctaaaattgattctagaaaggat
cagttgcagaaacatcaaagggtagagcctgaaatgaaagaggaaggtgaaatatcagat
actgaacaatataggcctcccccggataaggaggaaaagtggattggatggtgtgcagtt
gtgatggaggatgaagaggaaacactgaagcgtttagagaggttgcaaactaccagtgta
gatcttccaaaggaaaaggttctttctaggattagaaagtacctgcaacttgtcggaaga
aagattgataagattgtccagcaacatgcagcatcacacaagcaacaccgaatgaccaga
agattgtggaattacgtatctacctattcaaatctttctggggaaaggttatatgatatc
tattctaaacttaaggaggaacaaatggaagttggtgtgggaactgcccatttcaacagt
tttgcaccaggtcccagtgatagggatggtgatgcaagtcagtttccacatttttacagc
gactaccatagaaagccaagaccttaccagcatctgtctgtaccttcagaatcatatcat
aagaatcaaaacacagggaagtcagaatcttggaaacgtcgaaagagatcggacccagat
gatcacttccaaaaccaaccttaccagcaaatcaacattgctaatgggaatcgagtacca
gagccaagcaactctgcaggaattcttggttggggcccagtagaaatgagacgatatggt
aatgaaaggccaaataaggcacacactggtcgtttctttcctggacaagggcatttgtca
tag

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