Typha angustifolia (narrow-leaf cattail): 140765100
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Entry
140765100 CDS
T11061
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang00040
Pentose and glucuronate interconversions
tang01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
140765100
Enzymes [BR:
tang01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
140765100
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Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF8471
Rrn7_cyclin_C
Motif
Other DBs
NCBI-GeneID:
140765100
NCBI-ProteinID:
XP_072960118
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All DBs
Position
8:join(2058752..2059089,2059175..2060060,2060131..2060336,2063149..2063374)
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AA seq
551 aa
AA seq
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MSSLLSLFHTSPNLTSRPNSLQVYSVVQKALLFFYLLHKLLASHISPPKSTFFLLISTIK
MLSLPFLLLLPTYILILLLPFPFPTSSSSPFPNSSFHLHPLPDPDSVVLEVQRKLDSSRR
RVLSSSSCFTGNPIDDCWRCSSSDWHTDRQRLADCAIGFGRGAVGGKGGPIYVVTSSADA
DPVNPVPGTLRHAAIQEGPLWIVFSSSMTIRLSEELLVNSFKTIDGRGAEVHIAGGACIT
LQYVSHVIIHNIHIHGCRPAGNANVRASPTHSGWRTKSDGDGVSLYGARDVWVDHCSISE
CADGLVDAIMGSTGITISNNYFSNHDDVMLMGHSDDYLPDSGMQVTIAFNRFGEGLVQRM
PRCRRGYFHIVNNDYTYWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDAQEGDW
DGWNWRSEGDVMVNGAFFVPSGDGLGVKYGKASSVDPKSASLVDQITQNAGVIGGPRDNG
DGGGNSGVNYGGGVTTAAGGEGGSKGGGVGFGYLGMVFASGAELPPSHCYSSLFLAITLV
IALFSLCVHPS
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccctcctctctctcttccacacttccccaaatctcacctcccgtcccaactct
ttacaggtctactccgtcgttcaaaaagccctcctcttcttttatctactgcacaaatta
ctagcatcccacatttcccccccaaaatccaccttcttcctcctaatttccaccatcaaa
atgctttccctcccctttctcctcctcctcccgacctacattctcatccttctccttccc
ttccccttccccacctcctcctcctcccctttccccaactcctcctttcatctccaccca
ctccctgaccccgactccgttgtcctcgaggtccagaggaaactcgactcctctcgccgc
cgcgttctctcttcgtcttcctgcttcaccgggaacccgatcgacgactgctggcgctgc
tcgtcctcggactggcacaccgaccggcagcgcctcgccgactgcgccatcgggttcggg
cgaggcgccgtcggcgggaagggcggcccgatctacgtagtgacctcctccgccgacgcc
gaccccgtcaaccccgtccccggcaccctgcgccacgccgcgatccaggagggcccgctc
tggattgtgttctcctcctccatgaccatccgcctctccgaggagctccttgtcaacagc
ttcaagaccatcgacggccgcggcgccgaggtccacatcgccggcggcgcctgcatcacc
ctccagtacgtctcccacgtcatcatccacaacattcacatccatggctgccgccccgcc
ggcaacgccaacgtgcgcgcctcccccacccactccggctggcgcacgaagtccgatggc
gacggcgtctccctctacggcgcgcgcgacgtctgggtcgaccactgctcgatatcggag
tgcgccgacggcctcgtggacgcgatcatgggatcgacggggatcaccatctccaataac
tacttctccaaccacgacgacgtgatgctgatgggccacagcgacgattacttgccggat
tctggtatgcaggtcacaatcgcgttcaaccgattcggggaagggttggtccaacggatg
ccgaggtgtcgcaggggctacttccacatagtaaacaacgactacacctactgggagatg
tatgcgatcggtgggagtgcgaatcccaccattaatagccaggggaatcgatacactgct
ccgtctgatcccaatgccaaagaggtgacgaagagggtggatgcacaagagggtgattgg
gacggatggaattggagatcggagggagatgtgatggtgaacggagccttcttcgtgccg
tccggcgacggactgggggtcaagtacggcaaggcgtcgagcgtggatccgaagtcggcg
agcctcgtcgaccagatcacgcagaacgccggagttatcggtggacccagggataatggc
gacgggggtggaaactcgggggtcaattacggtggaggtgtgactacagccgccggaggc
gagggcggcagcaaagggggaggagtgggatttgggtatcttggtatggtgtttgcaagt
ggtgcagaattgcctccctcccactgctactccagtctgttcttagctatcactctagtt
attgccctcttctctctatgtgtgcatccctcatag
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