KEGG   Typha angustifolia (narrow-leaf cattail): 140765138
Entry
140765138         CDS       T11061                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140765138
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140765138
   03012 Translation factors [BR:tang03012]
    140765138
Enzymes [BR:tang01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     140765138
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     140765138
Translation factors [BR:tang03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    140765138
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 AAA_19 nSTAND3 T2SSE ATPase Dicer_dimer AAA_16 PhoH AAA_30
Other DBs
NCBI-GeneID: 140765138
NCBI-ProteinID: XP_072960176
LinkDB
Position
8:join(5834142..5834543,5836341..5836495,5836578..5836665,5836851..5837096,5838727..5838822,5839948..5840136,5840279..5840438,5840538..5840668,5843390..5843557,5843619..5843891,5845296..5845490,5845687..5845890,5846115..5846184,5846287..5846435,5847137..5847445,5847842..5847901,5848040..5848192,5848296..5848406,5848952..5849398)
AA seq 1201 aa
MLFAALLRGRLRSRPRLLPNPSLNPRPPRNPSASSCSTAAMKGNSPAGGVYVPPIPRLRS
VIVSARSVGFDWRDGCGQGGFALNPQSPTADAASATSGFPCFRQQSSNYSRYTYDEWSED
DSDRDLERSSTSGKGASTLDNVDEWKWKLSMLLRNESEQEVVSRERKDRRDYEQLAALAN
RMGLYSRQYVKVVVFSKAPLPNYRSDLDDRRPQREVSLPVGLHREVDALLEEYLARKCTN
RGSLPSVPFSRSSSSDSFATDEGLFEQQDPHTSTSAVMEKILRRRSLQLRSQQQSWQESP
EGQRMIEFRRSLPAYKERESLLAAISQNQVVVVSGETGCGKTTQLPQYILESEIDAARGA
SCNIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGILLRR
LLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLQRRPELRLVLMSATLNAELFSSYF
GGAPMIHIPGFTYPVRIHFLENVLEMTGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQI
ASVVEDALEAADFREYSLRTRESLSCWNPDSIGFNLIESVLCHICQKERPGAVLVFMTGW
DDINSLKEQLQANPFLGDPTKVLLLACHGSMASSEQKLIFNKPENAARKIVLATNLAETS
ITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYHLYPR
CVYDVFADYQLPELLRTPLQSLCLQIKSLRLGSISELLSRALQSPEPLSVENAIEYLKVI
GALDEKEELTLLGSHLSMLPVEPKLGKMLIFGAIFNCLDPVLTIVAGLSVRDPFLTPYDK
KDLADSAKAQFSCGDYSDHLALIRAYEGWKDSEREHSGYEYCWRNFLSAQTLKAIDSLRK
QFLFLLKDTGLVDENFSVCNKWSRDENLIRAVICAGLYPGVCSVVNKEKSISLKTMEDGQ
VMLYSNSVNGREAKIPYPWLVFNEKVKVNSVFLRDSTAVSDSVLMLFGGNISQGGLDGHL
KMFGGYLEFFMKADLAFTYLNLKRELEDLIHHKLQNPRMDIQNSEELLSAIRLLVTEDPC
SGQFVFGRQELKPKKVKSLLPTRSCVGGDNPKSQLQTLLTRAGHNNPIYKTKQLKNNQFR
AMVEFNSMQFVGQPCNNKKLAEKEAAAEALEWLMGESSPSSQDDDHMPTLLNVRRKKHHR
T
NT seq 3606 nt   +upstreamnt  +downstreamnt
atgctcttcgccgctcttctccgcggccgcctccgctctcgtccccgtctcctcccaaac
cctagccttaaccccagacctcctcgaaaccctagcgctagctcctgctccaccgcggcg
atgaagggcaactcccccgccggaggcgtctacgtgccgcccataccccgcctccgctcc
gtgatcgtctccgcccgatccgtcggattcgattggcgcgacggatgcggccagggcggc
tttgcgctgaacccgcagtcgccgacggccgatgcggcttccgccacttccggattcccg
tgcttccggcagcagagctcgaactactcacggtacacttacgatgagtggtcggaggat
gattcggatcgggatttggagcgctcatccacgtccgggaagggtgcctccactcttgat
aatgttgatgaatggaaatggaaactaagcatgcttctgcgtaatgaaagtgagcaagaa
gtggtatcaagggaaagaaaggatagacgtgactatgagcaacttgcagctttagctaac
agaatgggcttatatagtcgccagtatgtgaaggtagttgttttcagtaaggcgccactt
cctaactacagatcagatttagatgacagaaggcctcaacgggaggtgtctttacctgtt
ggtttgcatagagaagtggatgctttgcttgaagagtatcttgctcgaaagtgtacaaac
agaggaagtttaccaagtgttcccttttcaagatcaagcagctctgacagttttgctact
gatgaaggcctctttgagcagcaagacccacacacttccactagtgctgtgatggagaag
attctaagaagaaggagcttgcaattacgtagtcagcaacagtcttggcaggaatcacca
gaaggtcaaaggatgatagaatttcgaagaagtcttcctgcttacaaagaaagagagtca
cttttagctgctatatctcaaaatcaggttgttgttgtttcaggtgaaacaggctgtgga
aagacaactcaacttcctcagtacattttagagtctgagatagatgctgctcgtggagct
tcctgtaatattatctgtactcagcctagacgaatatctgctatggctgtatctgaaaga
gttgcagctgaaagaggagaaaagttgggtgaatcggttggctataaagttcgcctagaa
ggtatgaaagggagagatactcgactactattctgtactacaggaatcctgttaaggaga
ttgctagtggacagaaacttgaaaggcataacacatgttattgtagatgaaatccatgaa
cgtggcatgaatgaagatttccttctcattgtcctaaaggacctccttcaacgtcggcct
gaacttaggctagtattgatgagtgcaaccctcaatgctgagctattctcttcctacttt
ggcggggctccaatgatacacatacctggttttacgtaccctgttcgaattcattttctg
gaaaatgtcctggaaatgactgggcatagattgacaccatacaatcagattgatgactat
ggacaagaaaaatcatggaaaatgcaaaagcaagctctgaggaagaggaagagccaaatt
gcctctgttgttgaggatgcactggaagcggctgactttagggagtatagtttaagaact
cgtgaatcattatcatgttggaatcctgattcgattggcttcaacttaatagagagtgtc
ttatgtcatatatgccaaaaagaaagacctggtgcagttttagtgttcatgactgggtgg
gatgacattaattctctgaaagagcagctgcaagctaatccctttcttggagatcccacc
aaagttttgcttcttgcatgtcatggttccatggctagttcagaacagaaactaatattc
aacaagcctgaaaatgctgcaaggaaaattgttcttgcaacgaacttggctgagactagt
attacaatcaacgatgtggtgtttgttgttgactgtggaaaggcgaaagagacatcttat
gatgccctaaacaacactccttgtttgcttcctacatggatatctaaggcttctgctcga
caaagaagaggaagagccggtcgtgtccagccaggggaatgttaccatctttatccacga
tgtgtatatgatgtgtttgctgattaccagttgccagagcttctaagaacaccattacaa
tctctttgcttgcaaataaaaagtttacggcttggaagcatctcggagttattatccaga
gctttacaatcaccagaaccactatcggtagagaatgccattgaatatctaaaagtaatt
ggagcactggacgagaaagaagaattaactctcctaggaagccacttgtcaatgcttccg
gtggaaccaaaattaggaaagatgcttatttttggggctatattcaattgtcttgatcca
gtattgacaattgttgctggtctcagtgtcagggatccatttttgactccatatgataag
aaggatcttgcagattctgcaaaagcacagttctcttgcggagattacagtgaccatctt
gctttgattcgagcatatgaaggatggaaggattctgaaagagagcattctggatatgag
tattgctggaggaattttctttcagctcagacattaaaggcaatcgactcacttcgaaag
caatttctctttctgctgaaggatactggcttggttgatgagaatttcagcgtgtgcaac
aagtggagtcgtgatgagaatctcatccgggcagttatatgtgcaggcctgtatcctgga
gtttgctcagttgtgaataaggaaaagtccatatctttgaagacaatggaggacgggcaa
gtcatgctttactcgaattctgtcaatggtcgggaggctaagataccatacccgtggtta
gtatttaatgagaaggtgaaggtaaattcggtgtttcttcgtgactccacagcagtatca
gattctgtgctgatgctctttggaggaaacatctcacaagggggcttagatggacacttg
aaaatgtttgggggttacttggagttctttatgaaagctgatctagcatttacatatctg
aaccttaagagagagctggaggacctaatccaccataaacttcaaaatcctagaatggac
atccaaaacagtgaagaactcctatcagccattcgtctactagtcacagaggatccatgc
agtggccaatttgtctttggtcgccaggagctaaaacctaagaaagtgaagtcgctgctt
cctacaagatcttgtgtcggaggtgataaccccaagagccagcttcagacactgctaact
agagctggccataacaatccgatttataagacgaagcagctcaaaaacaaccagtttaga
gcaatggttgaatttaacagcatgcagtttgttgggcagccttgcaacaacaagaagctc
gcagagaaggaagcggcagctgaagcactggagtggctcatgggtgagtcctctccaagc
tcgcaagacgatgatcacatgccgaccctacttaatgttcgcaggaaaaagcatcacagg
acttga

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