Typha angustifolia (narrow-leaf cattail): 140765151
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Entry
140765151 CDS
T11061
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140765151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140765151
03009 Ribosome biogenesis [BR:
tang03009
]
140765151
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140765151
Spliceosome [BR:
tang03041
]
Complex A
U1 snRNP components
U1 related factors
140765151
Complex B
140765151
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
Pre-60S particles
Helicases
140765151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
140765151
NCBI-ProteinID:
XP_072960194
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All DBs
Position
8:complement(join(14032977..14033035,14033601..14033831,14033929..14034155,14034235..14034320,14034410..14034502,14035915..14036069,14036399..14036560,14036680..14036859,14038251..14038513,14038591..14038646))
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AA seq
503 aa
AA seq
DB search
MSRYDSRAGDPGSYRERRSDGGFSGGASSYGRGFESSSKRETVASGGGAAELDGLNHFDK
NFYVESPSVAAMTEADVVAYRRKREITVEGRDVPKPVKEFRDVGFPEYVLQEIAKAGFVE
PTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILGPGDGPIVLVLAPT
RELAVQIQQEATKFGASSKLKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHH
TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYN
PYKVVIGSIDLKANHAIHQRVEIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQIT
RQLRTDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDF
PGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILEEAGQKVSPELAAMGRGP
PPPSGHGGFRDRNRGFGGGRSWS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatagccgcgcaggcgaccccggctcctaccgtgaacggagaagtgat
gggggatttagcggcggtgcttcgagctacgggaggggattcgagtcgtcgagcaagagg
gaaacggtggccagcggcggaggcgccgcagaattggacgggctgaaccacttcgacaag
aatttctacgtggagtcgccgtccgtggcggcgatgacggaggccgacgtggtggcatac
cgccggaagagggagatcacggtcgagggccgggatgtcccaaaacccgtgaaagaattt
cgcgatgttggctttccagagtatgttttgcaagaaattgcgaaagctggctttgttgag
ccgactcctattcaagcacaaggttggccaatggctttaaagggtcgtgatcttattggc
attgctgaaacaggatcaggaaaaacacttgcctatttgctgcctgctattgttcatgtt
aatgctcagccaattttaggtcccggtgatggtcccatcgttttagtattggctcctaca
cgagagcttgctgttcagatacagcaagaggcaactaaatttggggcttcttctaagcta
aagaacacatgcatatatggtggggttccaaagggaccgcaagttcgagatctccagaaa
ggtgttgaaatagttattgctacacctggccgattgattgatatgttagagtcacaccat
acaaacttaaggagggtaacatatctcgttttggacgaggcagaccgtatgctggacatg
ggttttgagcctcagatcaggaaaatagtttcccagattcgtccggatcgtcaaactcta
tactggagtgccacttggcctaaggaagttgagcagcttgcaaggcagttcctgtacaac
ccatacaaggtggtcattggttctatagacctgaaagctaatcatgctattcatcagcga
gtagagattgtatccgaaagtcagaaatataacaaattggtcaaactgctggaggacata
atggatggaagccgcattttaatattcatggataccaagaaggggtgtgaccagataaca
agacaactgagaacagatggttggcctgctttgtcaattcatggtgataaaagccaagct
gagagggattgggtcctatctgagtttaaatctgggaagagtcctattatgactgctact
gatgttgctgctcgtggtttggatgtgaaggatgtaaaatatgtaatcaactatgacttt
cccggatcattagaggactatgttcatcgcatcggtcgaactggcagagctggagcgaaa
ggaacagcatatacgtttttcacagccgctaatgccagatttgctaaggatctaattaat
atattggaagaagctgggcagaaagtcagtcctgaactagctgcaatgggtcgtggtccc
cctcccccatcaggtcatgggggttttcgtgatcgtaataggggctttggtggtggccgc
tcatggagctaa
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