KEGG   Typha angustifolia (narrow-leaf cattail): 140765433
Entry
140765433         CDS       T11061                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140765433
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140765433
Enzymes [BR:tang01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     140765433
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     140765433
  mRNA degradation factors
   3'-5' decay
    Ski complex
     140765433
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Ski2_N Helicase_C DEXQc_Suv3 AAA_22
Other DBs
NCBI-GeneID: 140765433
NCBI-ProteinID: XP_072960619
LinkDB
Position
8:complement(join(17713760..17713972,17714047..17714173,17715006..17715244,17715668..17715882,17715974..17716442,17716961..17717114,17717874..17717983,17718883..17719140,17719290..17719343,17720514..17720624,17720707..17720862,17721591..17721963,17722172..17722239,17723298..17723408,17723569..17723769,17724090..17724191,17726294..17726401,17726610..17726767,17726973..17727078,17727630..17727707,17727788..17728048,17728347..17728604,17728781..17728915))
AA seq 1354 aa
MERLTAANEVAFRIGFSGHSGHLRLEPLPPVERSNSLTSLPEFIIPPAFPPETPESLKEY
LEEKYLQPELDSNVFSVENSGRLWEFDWFDRAKAPLEPSAARIVVAPSWELPFRRSRKAG
SSGIWDPDSVQIDVAELMEGAQDSGGLSHMPGPAKDFVRGSINNRPFRPGGLDDSQSLER
ILPEGARNGDWVRELINGGVAQTTPPSFRKGLELGHLKEYPYYWKHANIQCSNEQVQIAV
EENLNKYSVQFDDLFKKAWEEDITEKDVQEDTIEQSGSDGLIQIEVVTKEGDEFDVIPEV
QSSLDQILLTESEEISVKLNGSSEDSAQRDGEAWALVGGTEEIVTHFYELVPDMAIDFPF
ELDKFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQK
YRDFCGKFDVGLLTGDISIKPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVND
VERGVVWEEVIIMLPRHVNIILLSATVPNTVEFADWIGRTKQKKIRVTGTTRRPVPLEHC
LFYSGELYKICENDKFLSQGFTAAKEAYKKKNSSLVGGKSGLKTGHQVSHSATQVRQPDN
SSRGRGQNHKGPKHQMIGSGTSGVYQNSAGPRRSESSFWLLLVNNLSKKSLLPVVIFCFS
KARCDKSADSMYTTDLTTNSEKSEIRVFCDKAFSRLKGSDRKLPQVVRIQGLLRRGIGVH
HAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVAFDALRKFDGKEFRKLLPG
EYIQMAGRAGRRGLDKIGTVIVMCRDEIPEESDLKNVIVGKPTRLESQFRLTYTMILHLL
RVEELKVEDMLKRSFAEFHAQKNLPEKERLLLQKLRQPTKTIECIKGEPSIEEYYGLLLE
AETCREQISEAVMQSHSAQQFLSPGRVVIVKSKSADDHLLGVILKSPSATYKEYIVLVMI
TDSTSSMQPPSVSSNRVQEKESDNFQQGYFVVPKGKRGIDDEYFSSVSSRKGSGAVNIKL
PYSGNAAGLSYEVIAIEIKEIVSICQCKIKIDQVRLLEDPSNTAYSKTVQQLLEKKPDGS
KYPPALDAVKDLKMKDIFIVEKYRAYNMLLQRLTENKCHGCIKLKEHIVLIKEQMKQKEE
VNALKFQMSDEALQQMPDFQGRIDVLKEIHCVDSDLVVQLKGRVACEMNSGEELICTECL
FENQLDDLEPEEVVAIMSALVFQQNNASEPSLTPKLAQAKQRLYDTAIKLGVLQAQLKVA
VDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGIIVRTIVRLDETCREFRNAA
SIMGNSALYKKMETASNAIKRDIVFAASLYVTGV
NT seq 4065 nt   +upstreamnt  +downstreamnt
atggagagactcacggcggccaacgaggtcgcctttcggataggcttctccggccacagc
ggccacctgcggctcgagccgcttccacccgtcgagcgctccaattccttgacttctctt
cccgaattcatcatcccgccggcattccctccagagacaccagaaagtttgaaggagtat
ctggaggagaagtaccttcagccggagttggattccaatgtgttctcggtggaaaattct
ggaaggctgtgggaatttgattggtttgatagggcgaaggccccattggagccgtcagct
gctcgtattgttgtggccccctcatgggagttgccatttaggcgatcaagaaaggcagga
tcttcaggaatatgggatcccgattcagtacagatagatgtcgcagagctaatggaagga
gctcaagattctggaggtttgtcacatatgcccggaccagcaaaggattttgtaagagga
agcatcaacaaccggccattccgccctggtgggttagatgattctcagtcactagagagg
attctgcctgagggtgcccgcaatggggattgggtgcgagaacttatcaatggtggtgtg
gctcaaactacccctccaagtttccgcaaaggattggagttgggtcatcttaaggaatat
ccatactattggaagcatgccaatatccagtgcagcaatgagcaagtccagatagcagtg
gaagaaaatctgaacaaatattcagtgcaatttgatgatttatttaagaaagcttgggaa
gaagatattactgaaaaagatgttcaagaagatactattgaacaatcaggaagtgatggt
ttgatacagatagaagttgtaacaaaggagggtgatgaatttgatgttattcctgaagtt
caatcatctttagatcagatactactgactgaatctgaggagatatcagtgaagcttaat
ggatcaagtgaggacagtgcacaacgggatggagaagcttgggctcttgttggtggtact
gaagagattgtcacccatttttatgagcttgttccagatatggcaattgactttcccttt
gaattggataagttccaaaaggaggctatatattatctcgagaagggtgattctgttttt
gtagctgctcatacttcagctggaaagacagttgttgcggagtatgcatttgcgttagca
tcaaaacattgcacccgggctgtctatactgctcccatcaaaaccatcagcaaccaaaag
tacagggacttctgtgggaagtttgatgttggacttctcactggagacataagcataaaa
ccagaggcatcttgccttattatgaccacagaaatattacgctcaatgctttacagaggt
gctgatataattcgtgatattgaatgggttatatttgatgaagttcattatgttaatgat
gttgaaagaggtgtggtttgggaagaagttatcataatgcttccaaggcatgtcaatatt
atcctcctctctgcaacggtcccaaacactgttgaatttgcggactggattggtcggact
aaacagaagaaaatccgtgtgacagggactaccagaagacctgtgcctcttgagcattgc
ttgttctattctggagagttgtacaaaatatgtgagaatgataaattcctttctcaaggt
tttacagcagccaaagaggcttacaagaagaaaaattcgagcttggttggaggaaaatct
ggtttaaagacagggcaccaggtctcccatagtgcaacccaagtaaggcaacctgataat
tctagccgggggagaggacagaatcacaaaggacccaaacatcaaatgattggctcagga
acttctggggtttatcaaaatagtgcaggaccaaggagatcagagtcttctttctggttg
cttcttgttaataatctttcaaagaagtctcttttgcctgttgttattttctgcttctca
aaggcccgctgtgataaatcagcagatagcatgtatacgactgacctcacaactaattct
gaaaaaagtgaaatccgtgtcttctgtgacaaggctttttcacgcctaaaaggatctgac
aggaagcttccacaagttgttagaatccaaggcctactaagaagaggtattggtgttcac
catgctgggcttcttccaattgtgaaggaagttgttgagatgctcttttgtcgtggtgtc
atcaaggtactcttctccactgaaacatttgccatgggagtcaatgccccggcaaggaca
gttgcctttgacgctttaagaaagtttgacggcaaggaatttaggaagttgcttccagga
gaatatattcaaatggctggtcgtgctggcaggagaggtctggataagattggtacagtc
attgtcatgtgtcgtgatgaaattcctgaggagagcgacttgaagaatgtaattgttgga
aaacccactcgacttgagtctcagtttcgactgacttacaccatgatattacatctcctt
cgtgttgaagaactgaaggtggaggacatgctgaagagaagttttgctgaattccatgct
cagaagaacttacccgaaaaggagagacttcttctgcaaaagctacgccaacctactaaa
actattgaatgcataaaaggtgagccttctattgaagaatactatggtttgctgttggaa
gctgagacatgcagggaacagatatcagaggcagtcatgcagtcacactctgcacagcaa
tttctttcacctggaagggttgtcatcgttaaatcaaaatcagctgatgatcatttactt
ggtgttatccttaaatctccatctgctacatataaagagtatattgttttagtaatgata
actgacagtacttcatccatgcaacccccctctgtttcctccaatagagtacaagaaaaa
gaaagtgataacttccagcaaggttattttgttgttccaaaaggaaaacgcggaatagat
gatgagtacttctcatctgtcagttcgcgcaaaggatctggtgctgttaatataaagctt
ccttacagtgggaacgctgcagggttgagctatgaagttatagcaatagaaattaaagaa
attgtgagtatttgtcaatgcaaaataaaaatcgatcaagtccgacttcttgaggatcca
agcaacactgcttactcaaaaactgttcagcagcttcttgagaagaaaccagatggaagt
aaatatccacctgctttagatgcagtaaaagatctcaaaatgaaagatatctttattgtt
gagaagtaccgtgcatataacatgctgttacaaagactgactgaaaacaaatgccatgga
tgtataaaactgaaggagcacattgtgttgattaaggaacaaatgaagcagaaagaagaa
gttaacgctttaaagtttcaaatgtcagatgaggcacttcaacaaatgccagactttcaa
ggccgaattgatgtgttgaaggagatccattgtgttgactcggatcttgttgtccaactt
aagggtcgagtggcctgtgaaatgaactctggtgaggagctcatatgcacagaatgcttg
tttgagaaccaattggatgacctggaacctgaagaagttgtggccatcatgtctgcactt
gtttttcagcagaacaatgcctcagaaccatctcttactccaaagctggcacaggctaaa
cagaggttgtatgatacagcaattaaactgggagtgctccaagcgcaactcaaagtagct
gtagatcctgaggagtatgcacgagataatctcaaatttggccttgttgaagtcgtctat
gaatgggcaaagggaactccatttgcagatatttgcgagctaacagatgtatcagaaggg
ataattgttaggactattgtacgacttgatgaaacttgtcgtgaattcaggaatgcagct
tcaattatgggcaactctgcactgtataagaagatggagactgcatctaatgctatcaag
cgtgatattgtttttgcagctagtttgtatgtaacaggagtttga

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