Typha angustifolia (narrow-leaf cattail): 140765637
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Entry
140765637 CDS
T11061
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140765637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tang03400
]
140765637
DNA repair and recombination proteins [BR:
tang03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
140765637
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
140765637
NCBI-ProteinID:
XP_072960913
LinkDB
All DBs
Position
8:join(16434806..16434836,16434958..16435208,16435306..16436547,16436803..16436961,16437061..16438986)
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AA seq
1202 aa
AA seq
DB search
MPRKHPIGATPFEAFYHGSWHGVDYLSIRSGSIFVQFKYHGTVVDYNIHGDCLRMRSRRA
DVIDCTQLLRPGVDVCALLAHRAAASSEQERQAPKLLWHDAKIISIKRIPHGDRCDCLFS
IIFYRNESPISMKKSVADRRARIVTLDNIAVLQRLQKEASEDGYHQWNSTEDCISSIKSK
LLSDTFSSEISWLLVLSTLKGVDFGIKLVQDKVVYHILDNELGPAAILDVQSDCHGDNVS
PNYKETMKIVIFQLHDETMHPKIEALTLMASKEMAIQNKNFEEGLIDTKSESESDVEILY
DQMNLRHSKRQKILPDRFTSYSSPNFDRCSTKKMVDDLSIEKLETPENNLESGLPINENL
TPLEMQYMIMVEGQTLELHLQNRPTGSKKVPNGSCRQPQTGSSFSHRSHYFSAQAYRRKY
SNKKKLLSETEFKKMIDTCVGNIKSEINRQNEPTIQKKANAPTGDSEEAEDFTWSPSTED
HVEIEEHEELWKEMEHSLTTLTLLEQNQIFESELCSETSINSEKNGEQPCQHDYRMNEEA
GIVCRLCNFVCTEIRYVSPPVLHGDGRFSYKGRVDTRAFWYPDLQIDPFHNVTSPWDISQ
EECRRNIWTSIPDLKLKLHPHQKTAFEFIWSNITGSLEPEGMNHQSENTGGCVISHSPGS
GKTLLMISFINSYLSLYPKTRPLVLTPKTALYTWRKEFQKWGVPIPLYLINQDESYEMEP
QDCRIREFSSVSRRPNRRMLKIMNSLGKLRQWHEHPSVLLMTYSSFLSLSREDSKLEYTT
VLANVLQNSPGLLILDEGHNPRSTRSKLRKLLMKVKTEFRILLSGTLFQNNFEEYFNTIS
LARPRFIHDVISELDPRKTNTSSRRKRKEKQSKRVCRKERLARKLFVERIGQKIESSEED
ERKQGFDLLKSVTSRFIDVYEGEKSSTLPGLQIYTLALVPTDIQQEILSKLQRVVTHKRY
PLELELLITVGSIHPWLIKSVACVSNFFSNEELEKINNYKGNFQSGSKVKFVIDLVHKST
IRGERVLVFCHNLSPIKLLVELFELVFGWHRGEEVLVLQGEQELSVRAKVMDSFNGDFEG
KRKVLLASTNACAEGISLTAASRLVMLDSEWNHSKTRQAIARAFRPGQERVVYVYLLLAS
GTWEEDKYESNLRKAWMSKMIFRGQSINYSTCRQVEHISDELLKELVDEDQTKTFHMITK
HD
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcaaacatccgatcggtgcaactccatttgaggcgttttatcatggatcatgg
catggagtagattatttgagcatcaggagtgggagcatttttgttcagtttaagtaccat
ggaactgtcgtggactataacattcacggagattgtcttcgtatgcgatcgcgaagagca
gacgtgatagattgcacgcagctcctgaggccgggcgttgatgtctgtgcacttttggct
caccgagctgcggcgagttccgaacaagaacgacaagcacccaagctcttgtggcatgat
gccaaaattatctcaatcaagagaattcctcatggagatcgatgcgattgcctattttct
atcatcttctacagaaacgaatcgccaattagtatgaagaagtcggtagctgacagaagg
gctcggattgttactcttgacaacattgcggtactgcaaaggctccaaaaggaggccagc
gaagatggataccatcagtggaactctactgaggactgcatctcttcaattaaaagcaag
ctgctcagtgacacattttcttctgaaatttcatggctccttgtgttatcaactctgaaa
ggggttgattttggtataaagttggtgcaagacaaggttgtctatcatatcctagacaat
gagctaggaccagctgccatacttgacgttcaatcagattgtcatggtgataatgtctct
ccaaattataaggagaccatgaagatcgtgattttccaattacatgatgaaactatgcac
cccaagattgaagctcttacattgatggcttccaaggagatggccattcaaaataaaaac
tttgaggagggtcttattgataccaagtcagaaagtgaatcagatgttgagattctatat
gaccagatgaatttgaggcactctaaacgtcaaaagatcctgccagaccgttttactagt
tattcctcgccaaattttgatcgatgttctaccaaaaagatggtggatgatttgagcatt
gaaaagctagaaacaccagaaaataatttagagtctggtttgccaataaatgaaaatttg
acccctttggagatgcaatatatgataatggtcgaggggcaaactctggagcttcatctc
caaaatcgacctaccggaagtaaaaaggtgccaaatggttcatgcagacaacctcagact
ggaagttccttctcacatagaagccactatttttctgcacaggcatatcggagaaagtat
tcaaacaagaaaaagctgctaagtgaaactgagttcaagaaaatgatagacacttgtgta
ggcaatattaaaagcgagattaatagacaaaatgaacctactattcaaaaaaaggcaaat
gcaccaacaggtgattcagaagaagcagaagattttacctggtcaccatccaccgaagat
catgtggagatagaagagcatgaagaactatggaaagaaatggaacattctttaaccaca
cttacacttcttgaacaaaatcagatattcgagtcagaattatgcagtgaaaccagcata
aattcagaaaaaaatggagaacaaccatgccaacatgattacaggatgaatgaagaagct
ggaattgtctgcaggttatgcaactttgtatgcactgagataagatacgtttcacctcca
gtgttgcatggtgatggccgcttctcatataagggaagagtggatacaagagcattttgg
tatcctgatttgcaaattgatccttttcacaatgttacctccccgtgggacatctcacaa
gaagaatgccgtaggaacatatggacttctatccctgatcttaagttaaaattgcatcct
caccaaaaaacggcttttgagtttatatggagcaacatcactggatctctggaacctgaa
gggatgaaccatcaatcagagaatactggtggctgtgttatctcgcattcccctgggtca
ggaaagactttacttatgatctcatttatcaatagctacttgagcctatatccaaaaaca
cgtccattagtacttactcctaagactgcactgtatacatggcgtaaagaatttcagaaa
tggggagttccaattcctctatatctgatcaatcaagatgaaagttatgagatggaaccg
caggactgcagaatcagggagttttcttcagtttctcgcagaccaaatagaaggatgttg
aagattatgaattctctaggaaagctacggcagtggcatgaacatccaagtgttcttctt
atgacttattcttctttcttatcactttcaagagaagactcaaagctcgaatatacgaca
gttttggcaaatgtgctgcaaaatagtcctgggctattaattctagatgaggggcacaac
ccaagaagcacaaggtctaagttgagaaagctcttgatgaaggtgaaaactgaatttcga
attcttctttctggaacattatttcaaaataactttgaagaatatttcaacaccatatct
ttggcaaggcctcgttttattcatgatgtgataagtgaactagacccacgtaagactaat
acttccagtagaagaaagcgaaaggaaaaacaatcaaagagggtatgtcgtaaggagaga
ttagcaagaaaactttttgtggaaagaattggacaaaagattgaatcaagtgaagaggac
gagagaaagcaaggttttgatttgttaaaaagtgtcacatctagatttattgatgtttat
gaaggtgaaaaatcaagtacgcttcctgggttgcaaatctacacacttgccttggtacct
acagatattcagcaagaaatcttatcaaagctacagagggttgtaacacataaaaggtac
cctcttgaactggagttgctaatcaccgttggttccatccatccatggcttataaaatca
gtagcctgtgtcagtaattttttcagtaacgaagagctagaaaaaatcaacaactataaa
ggaaatttccagagtggttccaaggtgaagtttgtaattgatctggtgcacaaatctacc
atcaggggagagagagtattggttttctgtcacaatctctctccaataaaactgctggtg
gagttgtttgagcttgtttttggatggcacagaggggaggaagtgttggtgcttcaaggt
gagcaagaactatcggtgcgtgcaaaagtgatggatagttttaatggagacttcgaaggt
aaaagaaaggtcttacttgcttcaaccaatgcttgtgctgagggcattagtttgacagca
gcttcgaggttggttatgctggactctgaatggaatcattcaaagaccaggcaagcaatt
gcaagagcattccgaccagggcaggagagagtggtgtatgtttatcttctgttagcatcg
gggacatgggaagaggataagtacgaaagcaatctaaggaaggcttggatgtcgaagatg
atttttcgtggccagtctatcaattattctacctgcaggcaggtggaacatatcagtgat
gagctcctcaaagagctcgtggacgaagaccagacaaagacattccatatgataacgaaa
catgattaa
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integrated database retrieval system
