| Entry |
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| Name |
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
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| KO |
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| Organism |
tang Typha angustifolia (narrow-leaf cattail)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:tang00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140765727
09122 Translation
03013 Nucleocytoplasmic transport
140765727
03015 mRNA surveillance pathway
140765727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:tang03019]
140765727
03041 Spliceosome [BR:tang03041]
140765727
Enzymes [BR:tang01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140765727
Messenger RNA biogenesis [BR:tang03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140765727
Spliceosome [BR:tang03041]
Complex C
Other components
EJC/TREX
140765727
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140765727
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:complement(join(162790..162800,163169..163232,163313..163396,163476..163620,164196..164380,164447..164503,165057..165175,165315..165546,165674..165846,166283..166383,167240..167355))
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| AA seq |
428 aa
MGEVRETDAYEEELLDYEEDEEKAPDGSAAKVAGEATKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKIAVFYGGVHISKHKDILKNECPHIVVGTPGRILA
LSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLFECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS |
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| NT seq |
1287 nt +upstreamnt +downstreamnt
atgggtgaagtaagggagaccgatgcgtacgaggaggagcttctcgactatgaagaagac
gaggagaaggcccccgatggttccgctgccaaggttgccggtgaagctaccaagaagggt
tatgttggaattcacagttctgggttcagagatttcttgttgaagccagagctacttcgt
gcaattgttgactcaggatttgagcatccttccgaagtacaacatgaatgtattcctcaa
gctattcttggaatggatgtaatctgccaagcaaagtctgggatgggtaagacagctgtg
tttgttctttcaactcttcagcaaattgagcctgttgctggtcaagtagctgcacttgtt
ctatgccatacaagagaattagcttaccagatatgccatgagtttgagaggttcagcaca
tacttgccggatattaaaattgctgtgttctatgggggagttcacattagcaagcacaag
gatatactgaagaatgaatgtcctcatattgtagttggcactccaggaaggatactagcg
ctatctagagataaggatctttccctgaagaatgtgcggcatttcattcttgatgaatgt
gacaagatgcttgaatctcttgatatgcggagagatgtgcaggagatcttcaaaatgact
cctcatgataagcaagtgatgatgttttcagcaacacttagcaaggagattcgccctgtc
tgcaagaaatttatgcaagatccgatggaaatatatgtggatgatgaagccaaattgacc
ctccatggtttagttcagcactatatcaagttgagcgagttggaaaagaaccgaaaattg
aatgacctcttagatgcgctggacttcaatcaagtagtgatttttgtgaaaagtgtcagt
agagcagcagagcttaacaagttactctttgagtgcaacttcccgtcgatttgcatccac
tctggaatgtcccaagaagaaaggctgacaaggtacaagagcttcaaggaaggacacaaa
agaattcttgttgctacagatttggttggcaggggaattgatatcgagcgggtcaacatt
gttataaactatgacatgccagattccgccgacacatacttgcacagggttggaagagct
ggtcgtttcggtactaagggacttgctattacgtttgtctcatctgcatctgactcggat
gttcttaatcaagtacaagagaggttcgaggtggacattaaggagttgccagagcagatt
gacacctcaacatacatgccatcttga |
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