Typha angustifolia (narrow-leaf cattail): 140766445
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Entry
140766445 CDS
T11061
Name
(RefSeq) SWI/SNF complex subunit SWI3A homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140766445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140766445
03036 Chromosome and associated proteins [BR:
tang03036
]
140766445
Transcription machinery [BR:
tang03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140766445
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140766445
PBAF complex
140766445
GBAF(ncBAF) complex
140766445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
140766445
NCBI-ProteinID:
XP_072961893
LinkDB
All DBs
Position
1:complement(join(5837838..5838038,5838520..5838674,5843482..5843525,5843602..5843765,5843886..5844368,5845915..5846444,5846548..5846611))
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AA seq
546 aa
AA seq
DB search
MNPHSDEDDLARDLYTIPISSSWFQWDEIHETEKKSVPEFFEGCSITRSPRVYKEYRDFV
INKYREDPSRRLTFTEIRKGLIGDVCLLRKLFQFLEKWGLINFGVADGAETTTATAEVAG
PKVVVEEGAPAGVQVVMPAISAERKSVVAKGAVGGENGFRLPPLTSYSDVFGEWLSRKTQ
LCGFCGEQCGASHVETLEDGLVVCSKCSKNKNDEEEGTVEDLRDNKDSSNSNAAGAWTDA
ETLLLLEAVLKHGDDWDLIAQHVRTKSKSDCIARLIQLPFGEHMLGTINGKYDSRISVTK
TDDVRKNQHSLIKLSKEATTDCTQTDDKENVKEEVTQERPLKRRCLPSSIDATGSLMEEV
ALLSMVAGPHVAVTAADAAVTALCNENKYARKAFEINEYEIMNKSFSSNAEQQSDYNVGD
QDMVHEKAEKKREKNFGATAYRIRAAIGTALGAAAARAKLLADHEEREMELLMASIIEAQ
LRKIRYKIKHFEELEFIMEEEYTILQQLKESILEEWVTVLQQAFQAGIPRWRDHVLPKLP
VNKITL
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcacagcgacgaagacgacctcgcccgcgacctctacaccattcccatctct
tccagctggttccaatgggacgagatccacgagacggagaagaaatccgtcccggagttt
ttcgagggctgttccattacccggagcccgagggtctacaaggagtaccgcgattttgtc
atcaacaagtaccgggaggacccttccaggcggctaaccttcaccgagatccgaaagggt
ttgattggagacgtttgcttgctccggaagctcttccaattcttggagaagtggggtttg
attaattttggagtggcggatggggccgaaacaacgacggcgacggcggaggtggctggg
cctaaggttgttgtagaggaaggcgcgccggcaggagtgcaggtggtgatgccggctata
tctgcggagaggaaatcggtggtggcgaagggtgctgtgggaggagagaatgggtttagg
ctgccgccattgacgtcatactcagacgtgtttggagagtggcttagccggaagactcag
ttgtgtggattctgtggggagcaatgtggtgcgtcgcacgttgaaactttggaggatgga
cttgttgtatgttcaaagtgctccaaaaataagaatgatgaggaagaaggaacagtagag
gacctaagagataacaaggacagttctaacagcaacgctgctggtgcttggacagatgca
gagacccttcttcttttggaagctgtcttaaagcatggagatgactgggatcttatcgct
cagcatgtgcgtactaagagtaaatctgattgtattgcacggcttatacaactacctttt
ggtgaacatatgttgggcaccataaatggcaaatatgatagtagaatctcggtaaccaaa
acagatgatgttaggaaaaaccaacattccttaatcaagttgtcaaaggaggcaactact
gattgcacacaaactgatgacaaggagaatgttaaagaggaggttactcaagaacgtcct
ttaaagagaagatgcttgccttcttccatagatgctacaggctcattgatggaagaggta
gctttattgtctatggtggctggcccacatgttgctgttacagcagcagatgcagctgtt
acagcattgtgcaatgaaaacaaatatgcaaggaaagcctttgagatcaacgagtatgaa
attatgaataagtcattttcttctaacgctgaacaacagagtgactacaatgttggagat
caggacatggttcatgaaaaagcagagaagaagagagagaagaattttggtgccacagca
tatcgaatcagggctgccattggaacagccttgggggcagcagcggctcgtgccaagcta
ctagcagaccatgaagagagggaaatggaactcctgatggcatccattattgaagcacag
ttgagaaagatccgatataagatcaagcattttgaggagctggagtttattatggaggaa
gagtacaccatattacagcaactcaaggagtccattcttgaggaatgggtcaccgtcctc
caacaggcatttcaagctggaattccgagatggcgggatcatgtgttgccaaagttgcca
gtaaacaaaattacactgtag
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