Typha angustifolia (narrow-leaf cattail): 140766771
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Entry
140766771 CDS
T11061
Name
(RefSeq) uncharacterized RNA-binding protein C25G10.01
KO
K12897
transformer-2 protein
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140766771
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tang01009
]
140766771
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140766771
Protein phosphatases and associated proteins [BR:
tang01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
140766771
Spliceosome [BR:
tang03041
]
Common components
Common spliceosomal components
SR proteins
140766771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_DEAH11
RRM_5
Motif
Other DBs
NCBI-GeneID:
140766771
NCBI-ProteinID:
XP_072962512
LinkDB
All DBs
Position
9:join(1834831..1834833,1834911..1834930,1836027..1836182,1836294..1836393,1836457..1836606,1837176..1837245,1837389..1837558)
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AA seq
222 aa
AA seq
DB search
MADSPRRRYSQSPVHGRDRSRSRSRSRSPARIRSRVRPQSRSPSPIPRSRSRSRSRSRGR
HGAVNPGDTLYVTGLSGRVTERDLKDHFSKEGKVTGCYLVVEPRTRISRGFAFVTMETVE
DADRCIKYLNQSVLEGRYITVEKSRRKRPRTPTPGNYLGLKNSRDTRDRHDRGRNRGGYG
RDEYGGGYRRSPRRSPYRGGRDYSPYGSPDRGYGRRADVYAR
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctccacgcaggaggtattcacaatcccctgttcatggtagggatcgttct
aggtctagatcccgctcgaggtcgccagccagaatcagatctagggtcagaccacaatca
aggtctccatcacccattccgagatcacggtctcgatcacgatccagaagtcgtggcagg
catggcgcggtgaatcctggtgatactctatatgtgacaggactgtcaggcagagttaca
gaaagggatctgaaggatcacttttcaaaggagggaaaggtgactggatgctacctggtt
gtggaacctcgtacacgtatctctcgaggttttgcatttgtgacgatggagacagttgaa
gatgcggatcgatgcattaaatatctgaaccagtcagttctggagggccgttacataact
gtcgaaaagtcgaggaggaaacgaccaagaacacctacacctggaaactaccttggattg
aaaaacagccgagataccagagatcgccatgaccgtggcaggaaccgtggaggctatggt
cgtgatgaatatggaggtggctaccgtcggtccccaaggcgttcaccttaccgaggaggc
cgtgattactccccatatggaagcccagataggggttatggtcgccgtgcagatgtgtat
gccagatag
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