Typha angustifolia (narrow-leaf cattail): 140766892
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Entry
140766892 CDS
T11061
Name
(RefSeq) SWI/SNF complex subunit SWI3B isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140766892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140766892
03036 Chromosome and associated proteins [BR:
tang03036
]
140766892
Transcription machinery [BR:
tang03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140766892
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140766892
PBAF complex
140766892
GBAF(ncBAF) complex
140766892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
SWIRM-assoc_1
Myb_DNA-bind_6
DurN
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
140766892
NCBI-ProteinID:
XP_072962666
LinkDB
All DBs
Position
9:complement(join(12937441..12937638,12937748..12937875,12938330..12938450,12939708..12940097,12940519..12940892,12940972..12941170))
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AA seq
469 aa
AA seq
DB search
MATPPPPTVPLTSPPPPPLPPQSPHTPSTPAVKAETPTTAAASAPSRSPEPTTNASSYTI
TIPSCSGWFSWGEIHETEKRLLPEFFNGKSASKNPSVYKYFRDSIIGRFRAKPSIKLTFT
EARRGLIGDVGSIRRVFDFLEEWGLINYTPAPKPKEKKEAVERGGERKETPKKLCTNCLS
VCSLACFTTDKADITLCARCFVRGNYRPGLSSTDFKRVDITEEIKTDWTDKETLHLLEAI
LQYGEDWKKVAEHVGSRSEKDCIARFIKLPFGEQFLRPSEDGEDGRIYQNNDHGTAGPGG
EPSKRRRLTPLADATNPIMAQVAFLSAIVGSDVAEAAAQSAIAALCEVEISSTKIEASGN
EEESSANGQPVAELLKEATARAQSQLEKECQDVEQSLSDIVEVQMKEIQDKIVHFEKLES
LMEKEWLQLRYLRDSLFADQLNLVQHQRRAQLVATEMRDEKFRPTKDVN
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccgccgccgcccaccgtaccactaacttccccgcctccgccgccgcttccg
ccgcaatcccctcacactccatcgactcccgccgtcaaagctgagacaccaaccaccgcc
gccgcctctgcgccatctcggtcacctgagcccaccaccaacgcctcctcctacaccatc
accatccccagctgctccgggtggttttcttggggcgagatccacgagacagagaagagg
ctccttcccgagtttttcaacgggaagtcggcgtcgaagaaccctagcgtgtacaagtac
tttagggattcgatcattggaaggtttagggcgaagccctcgataaagctcacttttact
gaggcgaggcgggggctaataggtgatgtcggttccattaggagggtgttcgattttctt
gaggagtggggattgatcaattacacacccgcgccgaagccgaaggagaagaaggaggcg
gtggagaggggtggagaaaggaaggagactcccaagaagctatgcacgaattgcctctcg
gtttgcagccttgcttgcttcaccactgataaggcggatattaccctctgcgcgagatgt
tttgtccgtggtaactatcggcctggcctcagttctacagacttcaaacgggttgatatc
actgaagaaataaagacggattggactgacaaagagactcttcacctacttgaggccatt
ttacaatatggtgaagattggaagaaggtggctgaacatgtcggtagcagatctgagaaa
gactgcattgccaggttcatcaagttaccatttggagagcaatttctgaggccttcagaa
gatggggaagatggtaggatttaccagaataatgatcatggcactgctggacctggagga
gagccttcaaaacgaagacgtcttactccgctggctgatgcaacaaacccaatcatggct
caggttgctttcttatctgccattgtgggctcggatgttgctgaagctgcagctcaatct
gccattgctgcattatgtgaggttgagataagcagtaccaagattgaggcttcagggaac
gaagaagaatcttctgcaaatggtcaacctgttgcagaactactcaaggaggctactgca
agggcacagtcgcagcttgaaaaggaatgtcaggatgtggagcagtctttatcagatatc
gtggaagtccagatgaaagaaatccaggataagattgtacatttcgagaaattggagtcc
ctgatggagaaagagtggctccaactacgctatttgagggattccctctttgctgatcag
ctaaatttagtgcagcatcaacgtagagcccaattagtggctacagaaatgagagatgag
aagtttagacccactaaagatgtaaactga
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