Typha angustifolia (narrow-leaf cattail): 140767236
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Entry
140767236 CDS
T11061
Name
(RefSeq) nibrin homolog
KO
K10867
nibrin
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
140767236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tang03032
]
140767236
03400 DNA repair and recombination proteins [BR:
tang03400
]
140767236
DNA replication proteins [BR:
tang03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
140767236
DNA repair and recombination proteins [BR:
tang03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
140767236
BRCA1-C complex
140767236
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
Yop-YscD_cpl
Nbs1_C
Motif
Other DBs
NCBI-GeneID:
140767236
NCBI-ProteinID:
XP_072963178
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All DBs
Position
9:complement(join(3954211..3954267,3954370..3954472,3954555..3954616,3954735..3955147,3955762..3955933,3956313..3956399,3956478..3956586,3956690..3956736,3957019..3957149,3957692..3957780,3957890..3958151,3958240..3958293,3958427..3958463))
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AA seq
540 aa
AA seq
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MVWGLLPIDSLRGAQKYYIFSAGTYRVGRKDCDVVVQTDTSISRVHAEIIVDEMVSWDPS
RTESMDFHSNVRIVDRSKYGTSINKESGAEGSRMRKDQEVVLKHGNLVTFGTGNATFRWS
FVPIITFLNGRRPSRVDPSLQAIMISIGAYTTRKWSHDCTHVLVDESSPVTLELIEAVLA
RKQIVSKDWFKVLAEQNIRTEFPSCAPYVPNLSLDGTDVKSVDAELRESCLVGYTFILGS
AHKYKFGEKLNSLLEVSGAKFLQVEEYCSNSQTPGDGDDKQLVLVVPAKSMMEFNHLREL
SSLPKVTDLKLVAAILSGRLEAAVIEPPSFIVSSSHSTDETIVADSDVEIDTATSDRVIA
VPPQHDIKYEDEDKNDERWKDKEDATSLEDRENNANLSGESDKEKVFQPKDEDAQVIERN
DKIDDSIADRHENSEIIFSQDLIVRSMKTPAPVRSDTKEVNFKCFRKRETVSGNSFKDLI
PFSKDPYKESDYGSNESSEYIREERKRKQMEAIAEDLFNNEKARKRASAGTSIHALLASR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggtttggggattacttcctatcgactcgcttcgtggagctcagaagtactacatcttc
tcggcgggaacctacagagttggtcgaaaagattgcgatgttgttgttcagacggacact
tcgatatcacgagttcatgcggagatcattgttgacgagatggtttcttgggatccttca
cgtactgagtctatggatttccattcaaatgttcgtatcgtagaccgttccaaatatgga
acatctattaacaaagaatcgggggcagagggttctcgtatgcgcaaagatcaagaagtg
gtgctcaaacatgggaacttggtaacctttggaacgggtaatgcaaccttcaggtggtct
tttgttcccatcattacctttcttaatggcagaaggcccagtcgagttgatccttcacta
caagctatcatgatatctattggtgcatatactactcgtaagtggagtcatgattgtaca
catgttcttgttgatgaatcttctccagtgacgcttgagcttattgaagcagttttagct
agaaaacagattgtttctaaggactggtttaaggtgctcgccgaacaaaacattcgcaca
gaatttccatcttgtgctccctatgttccaaacttgtctctagatgggacagatgtaaaa
tctgtggatgctgaacttcgtgaaagttgcctagttggctacacatttatcttgggatca
gcacataagtataaatttggagagaagcttaattccttactggaggtatcaggagcaaag
tttcttcaggttgaggaatactgttcaaatagccagactccgggagatggagatgacaag
caattagttctcgttgttcctgcaaaatcgatgatggagttcaatcacttgcgtgagcta
tcttctttgcccaaagttacggacttgaagttggttgctgctatactgtctggacgtttg
gaggcagctgtcattgaacctccttctttcattgtttcgtcttcacactccactgatgaa
accatagtagctgattctgatgttgagattgatactgcaacctctgatcgtgttattgcg
gttccacctcaacatgacattaaatatgaagatgaagataaaaatgatgaaagatggaaa
gacaaagaagatgcgacaagtcttgaagatagagagaacaatgctaatctctccggtgag
tcagataaggaaaaggttttccaacccaaggatgaggatgctcaggttatagaaagaaat
gacaaaattgatgattccattgctgacagacatgaaaattctgagattatatttagtcaa
gacttgattgttagaagtatgaagacaccagctcctgttagatctgacacaaaagaggtt
aatttcaagtgctttagaaagagagaaactgtttctggcaatagcttcaaggacctcatt
ccattttcaaaagatccatacaaggaatctgattatggaagtaacgaatcatcagagtac
atacgggaggagaggaagcggaaacaaatggaagctattgcggaggacctgttcaacaat
gaaaaggcaaggaaacgtgcatctgctggtacttctattcatgctctccttgctagtcgc
tga
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