Typha angustifolia (narrow-leaf cattail): 140767330
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Entry
140767330 CDS
T11061
Name
(RefSeq) homeobox-leucine zipper protein ROC3
KO
K09338
homeobox-leucine zipper protein
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tang03000
]
140767330
Transcription factors [BR:
tang03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
140767330
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
Cupin_8
Motif
Other DBs
NCBI-GeneID:
140767330
NCBI-ProteinID:
XP_072963292
LinkDB
All DBs
Position
9:complement(join(494572..494994,495993..496088,496204..496472,496558..496726,497300..497512,497612..497713,497802..498281,498377..498565,498691..498808,498923..499143,499249..499290))
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AA seq
773 aa
AA seq
DB search
MTSMPFHAFSAIVPKEEGLMGMGRGVAKEEEMESGGSGSGHVDGLSCGEGEENDQLQQPF
QQQDPLQPAAKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQ
NRRTQMKAQQDRADNVILRAENDNLKNENFRLQAAIRNVVCPNCGGPAILGEMSFEEQHL
RIENARLKEELERLSCIPSRYGNRHVQPSLGPAPPLLMPSLDLDMAIYSRHFNENTMVSC
ADMISSVPIADDHPHFPSVLVMEHDKPIVLDMAMTAADQLARMCRTDEPLWARSGVHGIE
VLNLEEHARLFPWPINSKQEHHLEFRKESTRDTALVIMNSITLVDAFMDANKWMELFPSI
VSKARTLQIINTGISGQVNGSLHLMQAELQFLSPLVPVREIYFFRYCQMNAEEGVWTIVD
FPADGFQEGLQVSLAKCRRRPSGCLIQDMPNGYSRVIWVEHSEVEDKVVHQVFGEFVSSG
MAFGATRWVSTLQRQCERLASLMARSISDLGVIPSPEARKNMMTLSQRMVKTFCANISSS
GIQSWTALSDSPEDTIRVTTRKNTDPGQPNGVILTAVSTTWLPFHHQRVFELVTDEQRRS
QFDVFSSGNSLHEVAHIANGSHPRNCVSLLRINAASNSSQNVELLLQESSTHPTGGSLVV
CATIDVDAVQVAMSGEDPSYIPLLPMGFVISPAIAPPNRASQEDTEGPTSGAAGCLLTVG
MQVLASAVPSAKLNLSSVTAINNHICNTVHQISAALGGVAQAEPSATAAASEP
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtatgcccttccacgccttctccgccatagtccctaaggaggaagggttgatg
gggatggggaggggagtggcgaaggaggaggagatggagagcggcggctccggaagcgga
cacgtggacgggcttagctgcggcgagggcgaagagaacgaccaactacaacaaccattc
caacagcaagatccgctgcaaccggcggcgaagaagaagagataccatcgccacaccgct
cgccagattcaagaaatggaagcgttgtttaaggaatgtccgcacccggacgacaagcag
cggctgaagcttagccaagatctcggcctcaaacctcgccaggtcaagttctggttccaa
aaccgccgcacccagatgaaggcgcaacaagaccgggcggacaacgtgatactgcgagcg
gagaacgacaacttgaagaacgagaatttccggctgcaggcggcgatccgcaacgtcgtc
tgccctaactgcggcggcccagccatcctcggcgagatgtccttcgaagagcagcatctc
cgaatcgagaatgctcgcctcaaggaggagctcgagcggctgtcgtgcattccatcccgt
tatggaaaccggcacgtgcagccgtcgctagggccggcgccgccactattgatgccgtcg
ctagaccttgacatggccatatactcgaggcacttcaacgagaacacaatggtgagttgc
gccgatatgatctcctccgttccgatcgcagatgaccacccgcatttcccgagcgtgctc
gtcatggagcatgacaagccgatcgtgctcgatatggcgatgacggcggcggaccagctg
gcgaggatgtgccgcaccgatgagccgctctgggcgcgaagcggcgtgcatggcatcgag
gtattgaacttggaagaacatgcgagattgttcccatggccgattaattcgaagcaagaa
caccatttggagttcaggaaggagtcgactcgcgatacagcgttggttataatgaacagc
attacgttagtggatgccttcatggatgctaataaatggatggaattgtttccttcaatt
gtttccaaggcaagaacactgcaaattattaacactggaatctctggtcaagtgaatggc
tccctccatctgatgcaagcggagttgcaattcttgtctcctttggtgccggttcgcgag
atttacttctttcgatattgccaaatgaatgcagaagagggtgtgtggactattgttgat
ttccctgcagatggcttccaagaaggccttcaagtctctcttgccaagtgtagaagaagg
ccctccggctgtctaattcaagatatgccaaatggttactcaagagtgatatgggtagag
cactcggaggttgaggacaaggtagtgcaccaagtctttggtgagtttgtaagcagcggt
atggcctttggcgcaacacggtgggtctcgaccttacaacggcaatgtgaacggcttgcg
agcctcatggcgagaagcatctcagacctaggagttatcccttctccagaagcaagaaag
aatatgatgacactatcgcaaagaatggttaagaccttctgtgctaatattagctcttct
gggatccaatcttggacggcgctctcggattctccagaggacacaattagggttacgacg
cggaagaacaccgatccaggacagcctaatggtgtaattctcactgcagtctctacgaca
tggcttcccttccaccatcaacgagtgtttgagctcgtaaccgatgagcagcgacgttct
cagtttgacgttttctctagtggaaactcgctacatgaggtggctcacatcgccaatggt
tctcatccaaggaattgtgtttctcttctgcgcattaatgctgcaagcaactcatctcag
aacgtggagctcctactgcaagagagcagcacccacccgaccggcggcagcctcgtggtg
tgtgcaacgatagacgtcgatgccgtccaggtggcgatgagcggcgaggatccatcctac
attcctctccttcctatggggtttgtgatctccccagctattgcaccgccaaatcgtgct
tctcaagaagacacagaaggtcctacttcgggcgccgccggttgcctcctcacggtcggc
atgcaagtgctcgcgagcgccgtcccgtcggccaagctcaacctctccagcgtcaccgcc
atcaacaatcacatatgcaacaccgtgcaccagatcagcgccgcccttggaggcgtggct
caggcggagccttcggccaccgccgccgcatctgaaccctag
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