KEGG   Typha angustifolia (narrow-leaf cattail): 140767512
Entry
140767512         CDS       T11061                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013  Nucleocytoplasmic transport
tang03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    140767512
   03015 mRNA surveillance pathway
    140767512
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140767512
Enzymes [BR:tang01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     140767512
    5.6.2.5  RNA 5'-3' helicase
     140767512
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     140767512
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     140767512
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase NPHP3_N DEAD UvrD-helicase ATPase nSTAND3 Helicase_RecD SRP54 PhoH AAA_16 AAA_22 AAA_25 AAA_32 Ribosomal_S13_N
Other DBs
NCBI-GeneID: 140767512
NCBI-ProteinID: XP_072963547
LinkDB
Position
9:join(813580..814104,814882..815133,815210..815380,815540..815590,815672..815764,815893..815988,816138..816188,816289..816407,817064..817172,818428..818550,818629..818700,819365..819436,819538..819604,820155..820297,820378..820449,820528..820656,820755..820910,821015..821128,821209..821307,821381..821458,822450..822584,823455..823529,823666..823768,824202..824578,824657..824719,824809..824880,825882..826013,826126..826245,826338..826463)
AA seq 1264 aa
MESQGGVNNLYETASQPDTNGDAYTFLEFNTQGDDFDYPEFRELPQPVRNSPWPPPPAPE
SVPASPSAEIHVADAGAAASPSSVGSASSSKGRGGAGNQAPSVDALAAGMSGLSFEETGE
DENYEFGKGDFTEHACRYCGVANPACVVRCNMPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWD
LSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGV
DDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKVMKESQSKDNVTLRWDVGLNKKRIAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVN
HGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQVVRNTLPRRFGAP
GLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSASIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRNLDTSEKSELHKLQQLKDEQ
GELSSSDEKKFKALKRATEREILQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP
ECLIPLVLGVKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPFRLQVQYRM
HPCLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKVYNEHRLFLGGGQGNMHADNFGAVSS
PGLHADKRGNSYMQFGPPNGAHKPGMHPVGYPLPRVPLPPFPGAPHSQPYAIPTRGAVRG
PIGAVPQVPQRGNRAFGAGRGSAGGPIGGHLNHQQNYQQAMGGTGSPFNFPPLESPNSQP
SVGGPLSESGLMTQVPVQDLSQPFREGFSIGGMSQDFLGDDFKSQGSHVAYNIGDFSTQA
SQSGYGVDYATQGPQAGFPGNYLNQNTQPGYSHLGSGNDFISQDYMAHGSQGLFTQAGFN
DPSQDESSQRHFSMGPPGSLHSQGLMNNTIYSQSFAHYNTQPQALHPPPQQSHGSPSQKL
HYNG
NT seq 3795 nt   +upstreamnt  +downstreamnt
atggagtcccaagggggcgtaaacaacctctacgagacggcgtcgcagcccgacaccaac
ggcgatgcctacaccttcctcgagttcaacacccagggggacgacttcgactaccccgag
ttccgcgagctcccccagccggtgcggaactcgccgtggccacctcctccagcgccggag
tcggtgccggcttctccctcggccgagatccatgttgccgatgccggcgcagccgcgtcg
ccgtcttccgtgggatcggcgtcctcctccaagggccggggaggggctgggaaccaggcg
ccctccgttgatgccctagcggcggggatgagcgggctcagcttcgaggagacgggggag
gacgagaattatgagttcggaaagggggatttcaccgagcacgcctgcagatactgtggg
gtggcaaacccagcatgcgtagtgaggtgcaatatgccgtcgtgtcggaagtggttctgc
aactcaagggggaacacctcagggtctcatatcgtaaatcacctggttagagcaaaacat
aaggaagtttgcctacacaaagacagcccattaggagaaacaatcctcgagtgctataac
tgtggttgccgcaatgtattccttcttggattcatctcagcaaaaacagagagtgttgtt
gtccttctttgcagagagccatgtttgagtgtaaatgcactgaaggacatgaattgggat
cttagccagtggtgtccactcattgatgacaggtgcttcctgccatggcttgtcaaggta
ccttcagagcaggagcagctgagagctcgccaaattagtgctcagcaaattaacaaggtg
gaagaactctggaagacaaatcctgatgcatctcttgaagaccttgagaagcctggagta
gatgacgagcctcagccagtggttctgaaatatgaagatgcatatcagtatcaaaatgta
tttgcaccgctcataaaacttgaagctgattatgataaggtgatgaaagagtcacagagc
aaggacaatgtaacactacgatgggatgttggtcttaacaagaagcgcatagcctatttt
gtctttccaaaggaagataatgaactgaggcttgtaccaggcgatgagctgcggttgaga
tattcaggtgatgctgctcatcctgcatggcaatccgttgggcatgtgattaaacttact
gctcaggaggaggtcgcacttgaacttcgagctagtcagggagttccagttgatgtaaac
catggctttagtgtagattttgtttggaagagtaccagttttgatcgaatgcaaggggca
atgaaaacttttgctgtagatgaaacaagtgtcagtggatacatataccatcaccttttg
ggccatgaggttgaacttcaagtagtacgtaacactttacctcgtcgctttggtgcacct
ggccttccagaactaaatgcatctcaggtctttgctgttaagagtgttcttcagaaacca
attagtcttatacaaggccctcctggcacaggaaaaactgtcacatctgcttcaattgta
taccacatggctaaacagggtcaaggacaggtcctagtatgtgccccaagcaatgttgct
gttgaccagctcgctgagaagataagctcaacagggttaaaggttgttaggctttgtgcc
aaatcaagagaggctgtcatgtctcctgttgaacatctaacgcttcactaccaggtccga
aatcttgatacatctgaaaagagtgaattacataagctacaacagctaaaagatgaacaa
ggtgaattgtcaagcagtgatgagaagaagttcaaggcattaaaacgggctactgaaaga
gaaattttacagagtgctgatgtaatttgctgcacttgtgttggtgctggagatcctcgg
ttggctaacttccggttccgccaggttctcatcgatgagtctacccaggcaaccgagcct
gagtgtcttatcccgttagttctgggggtgaagcaggccgttcttgttggagatcattgt
cagcttggtcctgtcataatgtgtaaaaaagctgctcgtgctggcttagcacagtctcta
tttgagcgccttgtgcttcttgggcttaaaccattcaggctgcaggtccaatatcgaatg
catccttgcctttcagagtttccttctaatagcttttatgaaggtactctgcagaatggt
gtgacaattaacgaaagacaatcttctggaattgattttccttggccagttccaaaccgt
cctatgttcttttatgtccagatgggacaagaggagataagtgcaagtggaacatcttac
ctaaatagaactgaagctgcaaatgttgaaaaaattgtcactacgtttttgagaagcggt
gtcgttcctagtcagataggagttatcactccatatgaaggacagagggcatacattgtg
aattatatgtcgaggaatggtgctcttcggcaacagctgtataaggaaattgaggttgca
agtgttgactccttccagggcagggagaaagattacattattttgtcttgcgttaggagc
aatgaacatcagggtattggatttctcaatgatccacgtaggctgaatgttgcgctaaca
agagctagatatggcatagtcatcctagggaatcctaaagtcctaagtaaacaacctctt
tggaatagcttgttgacacactacaaggagcatgagtgccttgtggaaggaccactgaac
aacttgaagcagagtatggtacaatttcaaaagccaaaaaaggtttataatgaacatagg
ttattcttgggtggtggtcaagggaatatgcacgcagataattttggggctgttagttca
ccaggcttgcatgccgataagagaggtaattcttacatgcaatttggtccaccaaatggc
gctcataagcctggcatgcacccagtagggtatcccctacctagggttcctcttcctcca
tttcctggagctcctcattctcaaccgtatgctattccaactcgtggagctgtgcgcggt
ccaattggagctgttccacaggtcccgcaacgtggaaatagagcttttggggctggccgt
ggtagtgctggtggtcctatcggcggtcaccttaatcatcagcagaactaccaacaagct
atgggtggcactggatcaccctttaactttcctcccttggaaagtccgaacagtcagcct
tctgttgggggcccattatcagaatctggattgatgacacaggttccagttcaagatctc
agccaaccattccgtgaaggattttctattggcggcatgtctcaggactttttgggagat
gactttaagagccagggatctcatgttgcatataacattggagatttttctacacaggct
tctcagagtgggtatggtgttgattatgccactcaaggacctcaagctggattcccggga
aattacttgaaccaaaatactcagccaggatattcgcatttgggctctgggaatgatttc
atatctcaggattatatggctcatggatcacaaggtctcttcacacaagctggattcaat
gacccttcacaagatgagtcttctcagagacattttagcatgggcccgcctggttctctt
cactctcagggcctgatgaacaatactatttactctcagtcttttgctcattacaacact
caacctcaagctcttcatcccccaccacagcaaagtcatggctcaccgtcccagaagctt
cactacaatggctga

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