Typha angustifolia (narrow-leaf cattail): 140767639
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Entry
140767639 CDS
T11061
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140767639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140767639
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140767639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
140767639
NCBI-ProteinID:
XP_072963735
LinkDB
All DBs
Position
9:join(3662240..3662366,3662943..3663107,3663257..3663391,3664321..3664619,3664770..3664880,3665120..3665610,3666415..3666583,3667181..3667420,3667497..3667631,3667772..3667903)
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AA seq
667 aa
AA seq
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MPRKVSYGHAYDEDRDDYEDYDDYDDDYDYSHDTEESKSHQNGTLQISSQINEKVIKPAL
WKCSICTFDNDESLVCCDICGVFRDSFVKSGKDVREKVFDAVNGTSRDSGTSIMAKSLST
GMTKVDLTDDFQRKKTSTSYQKVYDLTQSTSTMASSSVNNIKKATLPPESDLLLSASLSK
AYQLKEDNSMSDSAMLPSNIKQLNFVETHKSNTRDNSYSQYKPEKWMMDQLHDASSQLNL
AIVGHVDSGKSTLSGKLLHLLGRISKREMHKHEKEAKEKGKGSFAYAWAMDESTEERERG
VTMNVGVAYFKSKKYRVVLLDSPGHKDFVPNMISGAAQADAAILVIDACMGSFEAGMTGN
GFGQTKEHAQLTRSFGVDQMIVAVNKMDAVGYSKDRFDFIKAQLGSFLRLCGFRDSLVTW
VPLSAIENQNVVSATSDARLSCWFHGPCLLDAIDSLQPPSRDVSKPLIIPICDVIKSHTM
GQVSACGKLETGAIRNGSKVLVMPSRELATVRSIEQDSNICSIARAGDNVAVGLQGVDWS
HVMPGGVLCHPDFPVPTATCLELKILVLDVATPILAGSQVEFHIHHAKEAARVAKIASLL
DQKTGKTSKRAPRFLKAKQSAIIQVTLSAAVCVQEFSKCRALGRVFLRSSGSTIAVGIVL
RVIDQDE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagtttcttatggacatgcttatgatgaagaccgtgatgattacgaagat
tatgatgactatgatgatgattatgactacagccatgatactgaagaaagtaaaagtcat
caaaatggtacattgcagatatcatcacagatcaacgaaaaagttatcaaacctgcactt
tggaagtgctccatttgcacctttgataatgatgaaagtctagtatgctgtgatatatgt
ggagttttccgagattcctttgttaagtctggcaaagatgttagagagaaagtgtttgat
gcagttaatggcacatccagagattctggaacatctataatggcgaagtctctttctaca
ggaatgactaaagtagatctgacagatgacttccaaagaaaaaaaactagtacatcatac
cagaaagtgtatgacttgacacagtcaacatctaccatggcttcttctagcgtcaacaat
attaagaaagctactttacctccagaaagtgacttattattatctgcctcattatctaaa
gcctatcaactgaaggaagataatagtatgtctgactcagcaatgttaccctccaatata
aaacagctgaattttgtggaaactcataaaagtaatacaagagataattcatatagtcag
tacaagccagagaaatggatgatggaccaacttcatgatgcatcaagtcagctaaatctt
gcaatagttggtcatgtcgattcgggaaaatcaacactctctgggaaattgctgcatctt
ttgggaagaatatcaaagagagaaatgcacaagcacgagaaagaggctaaagaaaaggga
aaaggatcatttgcctatgcatgggctatggatgagagtactgaagagagagaaaggggt
gtaacaatgaatgtgggtgttgcatacttcaaatcaaagaaatatcgtgttgttttgctg
gactcccctgggcacaaagactttgtcccaaatatgatatctggtgctgcacaagcagat
gcagctattctggttattgatgcctgtatgggttcttttgaagctggcatgactggtaat
ggttttgggcagactaaagaacatgctcaacttactagaagtttcggtgttgatcaaatg
attgttgctgtcaacaagatggatgccgtggggtactcgaaggacagatttgatttcatt
aaggcacaacttggcagtttcttgcgtttatgtggtttcagagactcccttgttacttgg
gtacccttaagtgccattgaaaatcagaatgttgttagtgctacttcagatgcacgttta
tcctgctggttccacgggccatgtctattggatgcaatagattctctgcagcctccatca
cgtgatgtttcaaagcctctcattatacctatatgtgatgtcatcaagtcacatacaatg
ggacaagtgtcagcttgtggaaagttagagactggcgctattcgaaatggttcaaaggtt
ttggttatgccttcaagggaattggctacagtgcgatccattgagcaagactctaatatt
tgcagcattgcgagagctggtgacaatgtggctgttgggttacaaggtgttgactggagt
catgtgatgcctgggggggtgctttgccaccctgatttcccagtgcctacggccacatgc
ttggagctaaagatcctcgtcttggatgttgcaactcctatcttagctggttctcaggtc
gagtttcacatacatcatgcaaaggaggctgcaagagtggcaaagatagcgtcgcttcta
gaccagaagacaggaaagacttcgaagagagcacctcgttttcttaaagccaaacaaagt
gctataatacaggtcacactgagtgcagcagtatgtgtgcaagaattctccaaatgccgg
gctcttggaagggtattcctacgatcatcaggaagcaccattgcagttggtatcgtgttg
cgggtaattgatcaagatgaatag
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