KEGG   Typha angustifolia (narrow-leaf cattail): 140768032
Entry
140768032         CDS       T11061                                 
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
  KO
K08737  DNA mismatch repair protein MSH6
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    140768032
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tang03400]
    140768032
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     140768032
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II HSD_C AAA_29
Other DBs
NCBI-GeneID: 140768032
NCBI-ProteinID: XP_072964211
LinkDB
Position
10:join(12566277..12566593,12567565..12568102,12568310..12568405,12568612..12568667,12569052..12569118,12569849..12569944,12570195..12570326,12570405..12570438,12570506..12570553,12570937..12571145,12571884..12572010,12572144..12572421,12572635..12572820,12572943..12573359,12573454..12573550,12573633..12573760,12574315..12574767)
AA seq 1092 aa
MQRQRSILSFFQKPPSGNSKSSAASSNTCSIHVQIPPIGEPPVTSDPDKTLQGPFPDIRG
TDTPPEKPRRPLFPAVEDDGCRRAQPVSSILQKLARAPVSGSSKNGNQGDKYSPTLHSRP
AEENNVSVEPETPFQERSKTFISKSLNDFDGVDPLHLELDFDSLGPETPAMRPLVPRLKR
VQEDWHDIDKKEVSSPLGSSKRMKLHDSPFHKKAHNEVSESVSSKFQWLNPSSIRDASGR
RPDDPIYDKRTLYIPPDALKKMSASQKQYWSVKCQYMDVVLFFKVGKFYELYEIDAEIGQ
RELDWKMTISGVGKCRQVGISEAGIDEAVQKLIARGYKVGRMEQLETSDQAKARGATSVI
QRKLVHVSTPSTVVDGSIGPDAVHLLALKEGKQLSEKGSAVYGFAFLDYAALKFWVGSIR
DDDSCAGLGALLMQVSPREVIYEGSGLSKETHMALTKYASAGSIKMQLTPTHASTDFLDA
AEVQKLNQLVHSKVYFRASTDSWSSALDYVVNRDIAVCALGGLIHHLSRLMLEDVLRNGE
ILPYHVYKSCLRMDGQTLVNLEIFCNNIDGGLSGTLYKHLDHCITASGKRLLRRWICHPL
KDIDDINDRLNIVEGFIKDSALVSIIIEYLRRTPDIERLLGRVKSTIGSSSALLLPSIGK
RVLKQRVKAFGSLVKGLRTGIDLLNLLLREDHGILSLSKLVNLPTLSCLGEFLHQFEVAL
DEDFPQHQDHDVKDSDAETLAVLVELFVGKDTKWSEVINAINCIDVLQSFASTTATSCGS
MSRPVFLPRNSSSVGYNKEDKGPVLQMKGLWHPYAVAQSANGLVPNDISLGEDPTGRNLC
ALLLTGPNMGGKSTLMRATCLSVILAQLGCYVPCESCVLSPADIIFTRLGANDRIMSGES
TFFVECAETASVLRNATQDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEKVCCRLLFATH
YHPLTKEFACHPHVNLQHMACAFNPRSGEELVFLYRLSNGACPESYGLQVALMAGIPSHV
VEAASKASQKIKLAITQNFKSSEGRSKFSTLHEEWLKTLLAVSRVNNRGWDEDTSDTLLC
LWHELKSHHAIS
NT seq 3279 nt   +upstreamnt  +downstreamnt
atgcagcggcaacgatccatcctctccttcttccagaagccgccgtcggggaacagcaaa
tcctctgccgcctcttcgaatacttgctcgatccatgtccagattccgccgatcggagag
ccgcctgtgacatccgatcccgataagaccttgcaaggtccgtttccggacatccgggga
accgatactccgccggagaagcctcgccgtcctttgtttccggcggttgaagacgatggc
tgccgcagagctcagccggtatcgagcatcttgcagaagcttgcgagggcacctgtttcg
gggagctcaaagaatgggaaccaaggggacaaatactcccctactttacattctagacct
gctgaagagaacaatgtgtctgtagaacctgaaactccttttcaggaacgttcaaagaca
ttcatctcgaagtctttaaatgacttcgatggagtggatcctctgcatcttgaacttgac
tttgattctttggggccagagaccccagctatgcgaccacttgttcctcgtttgaagcgg
gtacaagaagattggcatgatattgacaaaaaggaagtttcttcccctttaggctctagc
aaaaggatgaagcttcatgactctccatttcacaagaaggcacacaatgaagtttctgaa
agtgtaagcagcaagtttcagtggctcaacccttcctccattagagatgcaagtggcagg
agaccagatgacccaatttacgacaaaagaactctttacattccacctgatgcactaaaa
aagatgtctgcatctcaaaagcagtactggagtgtgaaatgccaatatatggatgttgtc
ctcttttttaaagtaggaaagttctatgagctgtatgagatagatgctgagattggccag
agagagcttgactggaaaatgactattagcggtgtgggtaaatgcagacaggttggtatt
tctgaggctgggattgatgaagccgtgcagaagcttatagctcgagggtataaagttgga
agaatggagcagcttgagacctcagatcaagccaaagcgagaggggcaacttctgttata
caaagaaagttggttcatgtgtcaacaccatcaacggtagtcgatggtagcataggacca
gatgctgttcaccttcttgctttaaaagagggaaaacaactttcagagaaaggctctgcg
gtttatggatttgcttttcttgattatgctgctttgaaattctgggtgggttctatccgt
gatgatgattcttgtgcagggctaggcgctctactgatgcaagtttctccaagagaagta
atctatgaaggctcagggctttccaaagaaactcacatggcactcaccaaatatgcttca
gctggttccattaaaatgcaattgactcctacacatgctagcacagatttcttggatgct
gctgaagttcaaaaattgaatcaattggtacattctaaagtttactttagagcatctaca
gattcgtggtcatcagcacttgattatgtggtgaatcgtgatattgctgtttgtgctctt
ggtggacttattcaccatctgtctaggcttatgctagaagatgttctcagaaatggtgaa
attttgccttatcatgtatataaaagttgcctaaggatggatggtcagactctcgtgaat
cttgaaattttctgcaataacattgatggtgggttgtcaggaaccttatataaacatctt
gatcactgcataactgcatccggcaaaagacttttaagaaggtggatatgtcatcccctt
aaagacattgacgatatcaatgataggcttaatattgtcgagggattcatcaaagattca
gctctagtctccatcattattgagtatcttcgcagaactccagacatcgagagactgctg
ggacgagtcaagtctactatcggttcatcatctgcacttctattgccttcgattggaaaa
agagtattaaaacaacgggttaaagcatttggttctcttgtcaaaggtcttagaactgga
atagacttgttaaatttgttgctgagggaagaccacggaatcttgtcactatcaaagctg
gtcaaccttccaacactaagctgtcttggtgaattcctgcatcaatttgaagtagccttg
gatgaggactttccacagcaccaggatcatgatgtgaaagactctgatgccgaaacttta
gctgttctagtagagctttttgttggaaaggatactaaatggtctgaggtcatcaacgca
atcaactgcattgatgtgcttcagtccttcgcatcaaccacagcgacatcatgtggttct
atgagcaggccagtgtttctgcccaggaattcaagttctgtgggttacaacaaagaagat
aaaggccccgtacttcaaatgaagggtctatggcatccttatgctgttgcacaaagtgcg
aatgggttagttcccaatgatatttctcttggtgaagacccaactggtcgcaatctttgc
gcattgctgctgaccggaccaaacatgggcgggaaatcaacattaatgcgtgccacctgt
ttgtctgttatacttgcccagctcggctgttacgtaccttgtgaatcatgtgtgctgtct
cctgctgatattatctttacgcggcttggtgctaatgatcggatcatgtccggtgaaagt
acattttttgttgaatgtgcggagacagcatcggtacttcgaaacgccactcaagattct
cttgtgttgctcgacgagcttggtagaggaacaagcacattcgatggatatgccattgcc
tacgctgtatttcgccatctggtggaaaaggtctgctgcaggttgcttttcgccactcac
tatcaccctctcacgaaagaatttgcttgtcaccctcacgtgaacctgcagcacatggcc
tgcgcttttaacccaagaagcggcgaggaactcgtctttctctaccggctctcgaatgga
gcctgcccagagagctacggtctgcaagttgccctgatggcagggatcccgagccatgta
gtcgaagctgcgtcaaaagctagccaaaagataaaactggccatcacccaaaatttcaag
tcaagcgaaggaagatccaagttttccacccttcatgaagaatggcttaaaacccttttg
gctgtttcccgggttaacaacagaggctgggatgaagatacctctgatacattgctttgt
ttgtggcatgaactaaagagtcaccacgccatcagttaa

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