KEGG   Typha angustifolia (narrow-leaf cattail): 140768101
Entry
140768101         CDS       T11061                                 
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
  KO
K08735  DNA mismatch repair protein MSH2
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    140768101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tang03400]
    140768101
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     140768101
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_II MutS_I ATG17_like PAXNEB Relaxase_C
Other DBs
NCBI-GeneID: 140768101
NCBI-ProteinID: XP_072964311
LinkDB
Position
10:complement(join(1270475..1270675,1271356..1271508,1271742..1271938,1272962..1273088,1275822..1275932,1276262..1276333,1276417..1276506,1276591..1276701,1276779..1277333,1277635..1278708,1278966..1279050,1279386..1279418,1279499..1279548))
AA seq 952 aa
MPGKPRVLFLSLRSFRRILGLCGSSIDGMMPCQYCLSFLHMYLLYGHRGGEISHSGDYYT
SHGENATFIAKTYYHTTTALRQLGHGPDGISSVSVSRSMFETIARDILLDRTDLTLELYE
GSGSNWRLTKRGTPGNLGSFEDVLFANNDMQDSPVTVALFPIFRENQFTVGLSFVDMTKR
KLGVAEFLDDSQFTNVESVLVALGCKECLLPMESGKSVELKPLQDAISRCNILLSERKKS
DFKSGDLVQDLGRIVRGSIEPVRDLLSDFVYALGALGALLSYAELLADDSNYGNYTIEKY
NLGSYMRLDSAAMQALNVLQSKTDLNKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDIH
EINCRLDLVQAFVEDAELRQGLRQHLKRISDIERLVHILKKRSCNLQPVIKLYQSSIRLP
HIRDVLEHYEGHFLSLIRKKYLNNLEFWMDEDRLSKFIALVEVSVDLDQLENGEYMISPS
YDPDLAALKDELSAVEQQIQNLHKQAGKDLDLSLDKALKLENGTQFGHVFRITKKEEQKV
RKKLSTHYIVLETRKDGVKFTNSKLKKLGDQYQKILNEYTSCQKGIVARVVDTSATFSEV
FEALAGILSELDVLLSFSDLATSCPVPYVRPDITPSDEGDIILEGSRHPCVEAQDGVNFI
PNDCTLVRDKSWFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCDRASVSIRDSIFAR
VGAGDCQLRGISTFMQEMLETASILKGASEKSLVIIDELGRGTSTYDGFGLAWAICEHLV
EVTRAPTLFATHFHELTSLAHENGQESHISHLGVANYHVGAHIDPSSRKLTMLYKVEPGA
CDQSFGIHVAEFANFPEAVVSLARSKAEELENFSPTPILSDDSKEEIGAKRKRVLSPDDL
SRGAARAHQFLQEFSALPLDQMDLNQAMEHVSKLRSDLEKDAASNPWLRQFF
NT seq 2859 nt   +upstreamnt  +downstreamnt
atgccaggcaagcccagggttttatttctttctttaagaagcttccgcaggatcctaggg
ctgtgcggttcttcgatcgacggtatgatgccctgccagtattgtttatcattcttgcac
atgtatctactgtatggccacaggggaggagagatatcacatagtggggattattatact
tctcatggtgagaatgcgaccttcattgcaaagacatattaccacactactactgctctg
cgacaattgggccatggccctgatggaatatccagtgtaagtgtaagtagaagtatgttt
gagactattgctcgagatatcttgctggacagaacagatctcacattggagctctatgag
ggaagtggatcaaattggaggttgaccaaaagaggaacacctggcaacctaggtagtttt
gaagatgttttgtttgcaaacaatgacatgcaggattccccagtcactgttgcactattt
cctatatttcgtgaaaaccagttcactgtagggttaagttttgtagatatgactaagcga
aagcttggcgtggcagagttccttgatgatagccaattcacaaacgttgagtcagtactg
gttgctctcggttgcaaagagtgtcttcttcccatggaaagtgggaaatcagtggaactt
aaacctcttcaagatgcaatttcaagatgcaatatacttttatctgagcgaaagaagtct
gacttcaaatcaggagacctagtgcaggatcttggtaggattgtcagaggttctatcgag
ccagttcgtgatcttctttcggattttgtttatgctttgggtgccttaggggctttgttg
tcatatgcggagttacttgcagatgatagtaactatggcaattacaccattgaaaagtac
aacttgggcagttacatgagactggattctgctgccatgcaagccctgaatgttttacag
agcaagactgatttaaacaaaaactttagtttgttcggactaatgaatagaacctgtact
gctggaatgggaaaaagactcctaaacaggtggcttaaacagcctctattagatattcat
gaaatcaattgcagacttgatttggttcaagcattcgtggaggatgcagagcttcgtcaa
ggactcaggcaacacctgaaaagaatatcagatattgagcgtttggtgcatatcctgaaa
aagagatcttgtaatctgcagccagtcataaaactctatcagtcaagcattcgactacca
cacatcagagatgttcttgagcattatgaagggcactttttgtcattgataaggaaaaaa
tatctgaacaatttagaattttggatggatgaagatcgattgagtaaatttattgctctt
gttgaggtttctgtagaccttgatcagctagagaatggtgaatacatgatatcacctagt
tatgatccagacttagctgcactgaaagatgagcttagtgcagttgaacaacaaatacag
aatttgcacaagcaagcaggaaaggatcttgatctttctcttgataaggcactgaagtta
gaaaatggaacacaatttggacatgtttttagaatcacaaagaaagaggagcagaaagta
aggaagaaactcagcacccattatattgttctagaaactcggaaggatggagtgaagttt
acaaactccaagcttaaaaagttaggagatcaatatcaaaagatactcaatgagtacaca
agttgtcagaaagggattgttgctcgagtagttgatacatcagctaccttttcagaggtg
tttgaagctcttgctggaattctctctgaactagatgttttgttaagtttttctgaccta
gcaacaagttgtcctgttccatatgtaagaccagacatcacaccctcggatgaaggagat
ataatactagaagggagtaggcacccttgtgttgaggctcaagatggtgtgaattttata
cctaatgattgtactcttgtacgcgacaagagttggttccaaattatcactgggcctaac
atgggtggtaaatcaacatttattcgacaggttggtgtcaatgtgttgatggcacaagtt
ggctgctttgttccatgcgatagagcaagtgttagcatacgagatagcatttttgctcgt
gttggggctggtgattgccaactccgtggaatttccactttcatgcaagaaatgcttgaa
actgcgtccatcttgaaaggtgcctctgagaaatcactagtaattattgatgagttgggt
cgtggaacatctacttatgatggatttggtctcgcttgggctatttgtgagcaccttgtg
gaagtgaccagagcaccaactttatttgcaactcactttcatgagttaacttcattagct
catgaaaacggccaagagtctcacatttctcatcttggagtggcaaattatcatgttggt
gctcacatagatccatcaagtcgcaagttaactatgctttacaaggttgagccgggtgct
tgtgatcaaagttttggtattcatgtggcagaatttgctaactttcctgaagctgttgtt
agtcttgcaagaagtaaagctgaggagttggaaaatttttctccaactcccatcctatct
gatgattcaaaagaagagattggagccaagcgcaagcgagtattgagccctgatgactta
tccagaggagcagctcgggctcatcaattcttgcaggagttctctgctcttcccttagac
cagatggatttgaaccaggccatggaacatgttagtaaacttcggtccgatcttgagaaa
gatgcagctagtaatccttggctgcggcagttcttctga

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