Typha angustifolia (narrow-leaf cattail): 140768124
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Entry
140768124 CDS
T11061
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140768124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tang04121
]
140768124
Enzymes [BR:
tang01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
140768124
Ubiquitin system [BR:
tang04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
140768124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
FAIM1
Motif
Other DBs
NCBI-GeneID:
140768124
NCBI-ProteinID:
XP_072964346
LinkDB
All DBs
Position
10:join(10410144..10410386,10412697..10413083,10413398..10413760)
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AA seq
330 aa
AA seq
DB search
MDLDNIECISSSDGMDEDEAAHLVHPFLKANGVAITGGGGSGNGVNGGGVISGPVITPAT
SVHELLECPVCTNSMYPPIHQCQNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAE
SLELPCKYYSLGCPEIFPYYSKLKHEAQCSFRPYNCPYAGSECSVVGDIPFLVSHLRDDH
KVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRF
MGDENDARNYSYSLEVGANGRKMIWEGTPRSIRDSHRKVRDSHDGLVIQRNMALFFSGGD
RKELKLRVTGRIWKEQQNPDSGVCIPNLCS
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggatttggataacatcgagtgcatctcgtcgtcggatgggatggacgaggacgaggcg
gcgcatctcgtccaccccttcttgaaggccaacggcgtcgccatcaccgggggaggaggc
agcgggaacggggtcaacggcggtggcgtgatctcaggaccggtgatcactccggcaacc
agcgtgcacgagctgctcgagtgccccgtgtgcacgaattccatgtaccctccgatccac
cagtgccaaaatgggcatactttgtgttccacatgcaaaaccagagtgcacaaccggtgc
cctacttgtagacaagagcttggggacatcaggtgtttggcattggaaaaggtggctgaa
tcacttgaacttccctgcaaatactattcattgggttgcccggaaatcttcccatactac
agcaaactcaaacatgaagctcagtgcagcttcagaccatataattgcccatatgctggc
tctgaatgctcggttgttggtgatattcctttccttgtttcacatttacgggatgatcac
aaagtagacatgcacactggatgcacattcaaccatcggtatgtgaaatccaatccacgg
gaggttgaaaatgctacttggatgcttactgtcttccactgttttgggcagtacttctgc
ctgcactttgaggcctttcagcttgggatggcacctgtgtacatggcttttcttcgtttc
atgggtgatgagaatgacgcaaggaactacagctatagccttgaggttggagccaatgga
aggaaaatgatatgggaaggcacacctaggagcattcgcgacagccaccggaaggttcgt
gatagccatgatggcctcgtaatccagaggaatatggcgcttttcttctccgggggtgat
aggaaggagctaaagttgcgggttacaggccggatctggaaggagcaacagaaccctgat
tctggtgtctgcataccaaacctttgtagctaa
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