KEGG   Typha angustifolia (narrow-leaf cattail): 140768191
Entry
140768191         CDS       T11061                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140768191
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140768191
   03012 Translation factors [BR:tang03012]
    140768191
Enzymes [BR:tang01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     140768191
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     140768191
Translation factors [BR:tang03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    140768191
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 AAA_19 T2SSE Dicer_dimer NACHT nSTAND3 ATPase HTH_72 AAA_16
Other DBs
NCBI-GeneID: 140768191
NCBI-ProteinID: XP_072964463
LinkDB
Position
10:join(620090..620515,621152..621306,621399..621486,621674..621919,623037..623132,624157..624345,624502..624661,624774..624904,625819..625986,626058..626330,627488..627682,627897..628100,628197..628266,628378..628526,628982..629290,629670..629729,629857..630009,630126..630236,630668..631114)
AA seq 1209 aa
MLLAAVLRGRIHPRPFMTMSLVPFSYPLLRNPRPRITALNPRTTGGNPSSTAAMKASSAA
GGVYVPPVRRLLSMIASADGTLTTARSVDYEWRNGGGSLTGGDGDGFRYFRQQSSGYSRY
AYDECSDDESDRDMESSSASNKGASTLDNVDEWKWKLSTLLRNNNEQELVTREKKDRRDY
EQLAALAERMGLYSRQYAKVVVFSKVPLPNYRSDLDDKRPQREVSLPVGLQREVDALLGD
YLAQKRINRGSFSGVAFSRSSSSDSFATDEGFFEQQDPQTSTSTVMEKILRRRSLQLRNR
QQTWQESPEGQNMLEFRKSLPAYKERDALLAAISQNQVIVVSGETGCGKTTQLPQYILES
EIDAAHGATCSIICTQPRRISAMSVSERVAAERGETLGESVGYKVRLEGMKGRETRLLFC
TTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLN
AELFSSYFGGAPMIHIPGFTYPVRNHFLEDILEITGHRLTPYNQIDDYGQEKAWKMQKQA
LRKRKSQIASAVEDALEAADFRNYSLRTRESLSCWNPDSIGFNLIENVLCHICRKERPGA
VLVFMTGWDDINSLKEQLQANPLLGDPNKVLLLACHGSMASAEQKLIFEKPENGVRKIVL
ATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPG
ECYHLYPRCVYEALSDYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPESLSVQN
AIEYLKVIGALDEKEELTLLGRHLSMLPVEPKLGKMLILGAIFNCLNPILTIVAGLSVRD
PFLTPFDKKDLAESAKSQFSCRDYSDHLALVRAYEGWKDAEREHAGYDFCWKNFLSVQTL
KAIDSVRKQFLFLLKDTGLIDENLITCNKWSRDENLLRAVICAGLYPGVCSVVNKEKSIS
LKTMEDGNVMLYLNSVNGREAKIPYPWLVFNEKVKVNSVFLRDSTALSDSVLLLFGGSIS
RGGVDGHLKMLGGYLDFFMKPDLASTYLNLKSELEDLIHSKLLNPRMDIQTSEKLLSAIR
LLLTEDPCSGRFVFGRQEPKPKKPKSLLPATSSGGGDNSKSQLQTLLTRAGHDNPSYKMK
QLKNNQFRAMVEFNGMQFVGKPCNNKKLAEKDAAAEALKWLMEGASSGSRAVDHMSMLLK
SRKKKHHRT
NT seq 3630 nt   +upstreamnt  +downstreamnt
atgctccttgccgcggtgctgcggggccgcatccatccgcgccccttcatgaccatgtct
cttgtccccttctcctaccccctcctccgaaaccctagacctagaatcaccgccctaaac
cctagaacgaccgggggcaaccctagctccaccgccgctatgaaggccagctccgccgcc
ggtggcgtctacgtgccgcctgtccgccggctactctcgatgatcgcttccgccgacggc
acccttaccacggcccgatctgtagattatgagtggcgcaacggtggtggtagtctcact
gggggagatggcgacgggttccggtacttccggcagcagagctcggggtactcgcggtat
gcgtacgatgagtgctcggatgacgagtctgatcgcgatatggagtcctcatcggcatcg
aataagggtgcctccaccttagataatgttgatgaatggaagtggaaactaagcacactt
ctccgaaacaacaatgagcaagagctggtaacaagagagaaaaaggacagacgtgattat
gaacaacttgcagcattggctgagagaatgggcttgtatagtcgacagtatgcaaaagtg
gttgttttcagtaaggtaccactgcctaactatagatctgatctcgatgataaaagacct
caaagggaggtgtctttacctgttggtttgcaaagagaagtggatgcgttacttggagat
taccttgctcaaaaacgaataaacagaggaagcttttctggtgttgccttttcaagatca
agcagctctgacagttttgcaactgatgagggcttctttgagcagcaagaccctcagact
tcaactagtactgtgatggagaaaattctaagaaggagaagcttgcaattgcgtaatcgg
caacagacttggcaggaatctccggaaggtcaaaacatgctagaatttcgcaaaagtctt
cctgcctataaagaacgagacgcattattagcagccatatctcaaaatcaggtcatcgtc
gtttcaggtgaaacaggttgtgggaagacaactcaacttcctcagtacattttggaatct
gaaatagatgctgcacatggagctacctgtagtattatatgcacacaaccaagacgaata
tctgcaatgtctgtctctgaaagagttgcagcagaaagaggggagaccttgggggaatca
gttggttataaagttcgtctggaaggcatgaaagggagggagactcgtctattattctgc
acgacaggaatcctgttaaggagattgctagtggacagaaatttgaaaggtgtaacccat
gttattgtagatgaaatccatgaacgtggcatgaatgaagatttcctacttattgtctta
aaagatcttcttccacgtcggcctgaacttaggctgatattaatgagtgcaactctcaat
gctgagctgttctcttcttactttggtggggctccaatgatacacatacctggcttcact
tatcctgtccgaaatcattttttggaggatatcctggaaattactggacatagattgact
ccatataatcaaattgatgactatggacaagaaaaagcatggaaaatgcaaaagcaagcc
ctaagaaagaggaagagccagattgcttctgctgttgaggatgcactagaagctgctgat
tttaggaactatagtttgagaactcgcgagtcgctatcatgttggaatcctgactcaatt
ggctttaatttgatagagaatgttttgtgtcatatttgtcgaaaagaaagacctggtgca
gttttagtgttcatgactgggtgggatgatatcaattctctgaaagagcagttgcaagca
aatccccttcttggggatcctaacaaagttttgttacttgcatgtcacggttcaatggcg
agtgcagagcagaaattaatcttcgagaagcctgaaaatggtgtgaggaagattgttctt
gctactaatttggctgagactagtattacaataaatgatgtggtttttgttgttgattgt
ggaaaagcaaaagagacgtcttatgatgcacttaataataccccttgtttgcttccaaca
tggatctcaaaggcttctgcacgacaaagaagaggaagagctggtcgtgtccagcctggg
gagtgttaccatctttatccacgttgtgtctatgaggcgttgtctgactatcaattaccg
gaacttctaaggactcctttacaatctctttgtttgcaaataaaaagtttacgtcttgga
agcatctccgagtttttatccagagctttacagtccccagaatctttatcggtacaaaat
gccattgaatatctaaaagtaattggagctctggatgagaaggaagagttgaccttgcta
gggcgacatttgtcaatgcttcctgtggagccaaaattaggaaagatgctcatcttgggg
gctatctttaactgtcttaatcctatactgactattgttgctggtctaagtgtcagggat
ccatttttgactccatttgacaagaaggatcttgcagaatctgcaaaatcacaattttca
tgccgagactacagtgaccatcttgccttggttcgagcatatgagggatggaaggatgct
gaaagggagcatgctggatatgacttctgctggaaaaattttctttctgtgcaaacctta
aaggcaattgattcagttcgaaagcaattcttatttcttctgaaggatactggtttgatt
gatgagaatctcatcacgtgcaataagtggagtcgtgatgagaatcttctccgggctgta
atatgtgcaggcttgtatcctggtgtttgctctgttgtgaataaggagaaatcaatatct
ttgaagactatggaggatggcaatgtcatgctttatttgaattcagtcaatggtcgggag
gctaagattccatacccctggttggtatttaatgaaaaggtgaaggtgaattcagtattc
cttcgcgactcgactgcgctctctgattcagtattgcttctctttggaggtagcatctca
cgaggcggagtggatgggcacttaaaaatgttgggaggttacctggatttctttatgaaa
ccggatctggcctcaacttatctgaaccttaaaagtgagcttgaggacctcatccatagc
aaacttctaaatcccagaatggacatccaaaccagcgaaaaactcctatcagccattcgt
ctgctgttgacagaggatccatgcagtggtcggtttgtcttcggccgtcaggagccaaag
cctaagaaaccaaagtcactacttcctgcaacctctagcggaggaggtgataactccaag
agccagctccagactctgctaactagagccgggcatgacaacccttcctataagatgaag
cagctcaagaacaaccagttcagagctatggtagagtttaacggcatgcagtttgttggg
aagccgtgtaacaacaagaagcttgcggagaaggatgctgcggctgaggctctgaagtgg
cttatggaaggggcctcctcaggatcccgtgccgttgaccacatgtcaatgctgctcaag
tcacgcaagaagaagcatcatagaacttga

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