Typha angustifolia (narrow-leaf cattail): 140768293
Help
Entry
140768293 CDS
T11061
Name
(RefSeq) F-box protein SKP2A isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
140768293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tang04121
]
140768293
Ubiquitin system [BR:
tang04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
140768293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
LRR_8
F-box
Colipase-like
Motif
Other DBs
NCBI-GeneID:
140768293
NCBI-ProteinID:
XP_072964630
LinkDB
All DBs
Position
10:join(8655053..8655150,8655904..8656161,8657441..8657789,8657866..8658007,8658667..8659043)
Genome browser
AA seq
407 aa
AA seq
DB search
MRSAGVHPCLPVATHVSVPLFNTREREREMNPRSSIEMVSLRPETGGLDVWFQNLMVSGE
RGKMGGAGPIMEGWKDLPMELLLRIISLVDDRMVIVASGVCTGWRDALCLGATNLSLSWC
KNNMNNLVESLAPKFTKLQVLSLRQNKPQLEDSAVEVVANYCHDLRDLDLSRSFKLSDLS
LYALAHGCPHLTKLNISGCSSFSDSALEYLTSHCKNLKNLNLCGCVRAASDRALQAIACN
CNKLQFLNLGWCEGVSDKGVISLASGCPDLRTLDLCGCVLITDESVVALANCCPHLRSLG
LYYCQNITDRAMYSLANSKVKSKRGLWDSVRSSTEDRVGLMNLNISQCTALTPPAVQAVC
DSFPALHTCPERHSLIISGCLSLTSVHCACSLQSHRAGRASVSSHAY
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgcgctctgccggggtccacccttgcttgcccgtagccacacacgtctccgttcctctc
tttaatacccgagagagagagagagagatgaaccctaggagctctattgaaatggttagt
ttgagacctgaaaccggaggattggacgtttggtttcagaacctcatggtgtcgggtgaa
agagggaagatggggggagctggccctataatggagggttggaaggatctgccgatggaa
ttgttgcttaggatcatttcccttgtggatgatcggatggttattgtggcatctggtgtt
tgcactgggtggagagatgctctatgtttaggtgctacaaatctctccctttcatggtgc
aagaacaacatgaataatcttgtggagtcacttgcccccaagttcacaaagctccaagtc
cttagtctacgacaaaacaaacctcaacttgaagacagtgctgttgaggttgttgcaaat
tactgccatgatttgcgggatctagaccttagcagaagttttaagctgagtgatctttca
ttgtatgccttagctcatggatgtcctcaccttacaaaactcaatatcagtgggtgctct
tcgttcagcgattctgctcttgaatatctgactagtcactgcaagaacctgaagaacttg
aatctttgtggatgcgtgagagctgcatctgatagagctttacaggctatcgcatgcaat
tgcaataagttgcaatttttgaatctgggttggtgtgagggtgttagtgataaaggtgtg
ataagtttggcgtctggatgccctgatctgaggactttggatttatgtggttgtgtgctt
ataacagatgaaagtgttgttgcattggccaactgttgccctcatctaagatcactgggg
ttgtattactgccagaacatcacagacagggcgatgtattcacttgcaaatagcaaggtg
aagagcaagcggggcctgtgggattcagtgcgaagcagcactgaagacagagtaggactc
atgaacctcaacataagtcagtgcacggccctaacgccccctgctgttcaggctgtttgc
gactcgtttcctgcactccacacatgccctgagaggcattcactgatcatcagcggttgc
ctcagcctcacgtctgttcactgtgcttgttctctccaaagtcaccgagcaggaagagca
tcggtatcttctcatgcttactga
DBGET
integrated database retrieval system
