KEGG T11061: 140768366

Typha angustifolia (narrow-leaf cattail): 140768366

Entry

140768366         CDS       T11061

Name

(RefSeq) transportin-1-like isoform X1

K18752

transportin-1

Organism

tang Typha angustifolia (narrow-leaf cattail)

Pathway

tang03013

Nucleocytoplasmic transport

Brite

KEGG Orthology (KO) [BR:tang00001]
09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    140768366
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140768366
   03009 Ribosome biogenesis [BR:tang03009]
    140768366
Messenger RNA biogenesis [BR:tang03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     140768366
Ribosome biogenesis [BR:tang03009]
Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    140768366
  Pre-60S particles
    140768366

SSDB

Motif

Pfam:

HEAT_EZ HEAT HEAT_GCN1 TPR_IPO5 IBN_N HEAT_2 TPR_DNAAF5 TOR1L1_N HEAT_MROH2B_C TPR_IMB1 Arm Cnd1 CEP104-like_TOG HEAT_MROH2B_1st INTS7_N PDS5 DNA_alkylation PSME4_C

Other DBs

NCBI-GeneID:

140768366

NCBI-ProteinID:

XP_072964721

LinkDB

Position

10:complement(join(9295402..9295485,9295572..9295631,9295711..9295779,9295861..9295912,9297820..9297944,9298042..9298113,9299168..9299242,9299313..9299375,9299477..9299578,9303862..9303969,9307511..9307594,9312120..9312230,9312391..9312462,9312632..9312706,9312785..9312910,9316392..9316490,9319323..9319436,9321533..9321646,9321822..9321881,9321985..9322014,9322106..9322162,9322260..9322326,9327693..9327778,9328133..9328183,9328539..9328619,9328789..9328866,9328964..9329053,9329154..9329441,9329560..9329736))

AA seq 889 aa
MAEPAMWQPQEEGFHAICGLLELQISPNSDQAGIWKQLQYYSMFPDFNNYLAFILARAEG
KSVDIRQAAGLILKNNLLTSYNSLFPSYRKYIKSELLSCLGATDKTIRSTVGTVISVILQ
LGRVFGWPELLQALVLCLDSNDLNHMEGAIDAIYKISEDVPEELDMDVPGNPERPINIFI
PRLLQLFQSPHATLRKLSLACINQYIVRMPSALYISMDQYLRGLFLLAQDPASDVRKLVC
AAWVQLTEVRPTVLEPHLKDIFEFILQANMDADDEVALEACEFWCAYFSGNLPPDGLREF
LPRLLPILISNMMYADDDELLCDAEEDESFPDRDQDVKPRFHTSGLRRSDAVEEKDDGII
NVWNLRKCSMAALKILSYRFGDEILPGLIPLIQEKLLSRSDDAWKQREASILALGLISKG
CRRGLYPHIAKVVACLMPLLDDKFPLIRSVTCWALSRFSKYIVQDIHQQNGREQFDKVLM
GLLRRLLDPNKRVQEAACSAFATLEEKGAEELVPHLEIILQHLLYAFARYQRCNFQIVCD
AIGALADAVGAELNQPKYIDILMPPLISKWQQLLNLDKDLFPLFECFASIAQALGPGFSQ
FAEPVFHRCINLIQTQELAKIDHVSAGVPYDKEFVVCSLDLLIELTEGLGSGIEKLVAQS
NLRDLLLQCCTDDAADIRQSAFVLLGYLARVCSVHLHPRLLEFLNAAAKQLNPLAVKEVV
SVATYSCWAIGELVIKVNQEVSPVALTVVSSLVPLLQNAGGLNKSLLVSSAITLGRLGWV
CPEFVAPHMKHFMEPWCIALCMIRDNSEKEDAFRGLCSMVKANPSTAVNSLPYICKAIAS
WHDIRSEDLHNEICQILIGYKQILGNGAWEQCMSTLEPTAMQRLSRYGV

NT seq 2670 nt +upstreamnt +downstreamnt
atggcggagccggcaatgtggcagccgcaggaggagggcttccacgcaatttgcgggctg
ttggagctccaaatctcccccaactccgaccaagccgggatttggaagcaactccaatat
tacagcatgttccccgacttcaacaactaccttgccttcatccttgcgcgcgccgaggga
aaatctgtggatatacggcaggccgccggtttgattttgaagaacaatctgttgacgtct
tataattctttgtttccttcttaccgcaagtacataaagtctgagttgttgtcttgcttg
ggagcaactgataagaccatcaggtctaccgttgggacggttatcagcgtcattttgcaa
ttagggcgagttttcgggtggccggagctgctgcaagcacttgttctatgtttggacagc
aatgatttgaatcatatggaaggtgccatcgatgcgatatacaagatatccgaagatgtt
ccagaagagcttgacatggatgttccaggaaatcctgaacgcccaatcaacatttttata
ccaagattattacagcttttccagtctccacatgcaacactcagaaaactctctcttgcc
tgtattaatcagtatatcgtgaggatgccttcagccttatatatctccatggatcagtac
cttcggggattatttcttcttgctcaagaccctgcttcagatgtgcggaaattggtttgt
gctgcatgggttcaactcactgaagtccgaccaactgttttggagccacatttgaaagat
atttttgagttcatcttgcaagcaaacatggatgctgacgatgaggttgctctcgaggct
tgcgagttttggtgtgcatatttttcgggtaatttgccaccagatggtttgcgggagttt
ctgccccgcttgcttccaattttaatatcaaatatgatgtacgctgatgatgatgagtta
ctttgtgatgctgaggaagatgaatcttttccagatagggatcaggatgtgaaacctcgc
tttcatacatcaggtttacgtcgatctgatgctgtagaagaaaaagatgacggcattatc
aatgtctggaacttacgtaaatgtagtatggctgcgctgaaaatactttcatatagattt
ggtgatgagattcttccaggcttgatacctttgattcaggaaaaactattaagtagaagc
gatgatgcctggaagcagagggaggcttccattttagctcttggtttaatatcaaaggga
tgtaggaggggactttatcctcacattgcaaaggtagtcgcatgtctcatgccacttctt
gatgataaattccctctcataaggagtgtcacttgttgggcactttctcgctttagcaag
tatattgtccaggatattcatcagcaaaatggccgtgaacaatttgataaagttctcatg
ggactgcttagaagattattggatcccaataagcgtgtgcaagaagctgcttgctcagca
tttgcaactcttgaagagaagggagctgaggaactagtgccacacttagaaataattctg
caacacttgttatatgcttttgcaagataccagagatgcaatttccagattgtctgtgat
gctattggtgctcttgcagatgctgttggagcagagttaaatcagccaaagtatattgac
atattgatgccaccattgatctcaaagtggcaacaactattgaacttggacaaagattta
tttccgttatttgagtgctttgcttccatagcacaggcattaggaccaggtttttctcag
tttgctgaaccagtatttcataggtgtatcaatcttatccagacccaagaattagcgaag
attgatcatgtttcagccggtgttccatatgataaagagtttgttgtctgctcattggac
ttgttaatagagcttactgaaggccttggaagtggcatagagaaactggttgcacaaagc
aacttgagggacctacttctgcaatgctgcacagatgatgccgctgatattcgccaaagt
gcctttgtacttctcgggtaccttgcaagagtttgctctgttcatcttcatcctcgcctg
ctcgagttcctcaatgctgcagccaaacaattgaatcctcttgcagtcaaggaggttgta
tcagtggcaacctattcttgttgggcaattggagaattagtgattaaggttaatcaagaa
gtctctcctgtagcattgacagtcgtttcttctttggttccccttcttcaaaatgcgggg
ggtctcaacaaatcacttctagtaagcagtgctattactctcgggaggcttggctgggtc
tgtccagaatttgtagcaccacacatgaaacatttcatggaaccatggtgtattgcttta
tgcatgataagagacaattctgagaaagaggatgccttccgtggcctttgttcaatggtg
aaggcaaatccatccactgctgtgaactcattaccttacatctgcaaagctattgcaagt
tggcatgacataagaagtgaggatttacacaatgaaatttgccaaattttgatcggctat
aaacagatacttggaaatggagcatgggaacagtgcatgtccacactagaaccaactgct
atgcagagactgtcaagatacggagtataa

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