KEGG   Typha angustifolia (narrow-leaf cattail): 140768506
Entry
140768506         CDS       T11061                                 
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013  Nucleocytoplasmic transport
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140768506
  09122 Translation
   03013 Nucleocytoplasmic transport
    140768506
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140768506
   03041 Spliceosome [BR:tang03041]
    140768506
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     140768506
Spliceosome [BR:tang03041]
 Complex C
  Other components
   EJC/TREX
    140768506
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    140768506
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2 DUF4350_C
Other DBs
NCBI-GeneID: 140768506
NCBI-ProteinID: XP_072964901
LinkDB
Position
10:join(3175967..3176101,3176191..3176316,3183272..3183313,3184441..3184500,3184591..3184653,3185066..3185146,3186166..3186240,3186337..3186384,3186565..3186633,3186735..3186868,3190000..3190075,3190405..3190595,3193089..3193169,3193547..3193757,3194097..3194321,3194402..3194482,3194570..3194689,3194793..3194852,3195495..3195622,3199226..3199322,3199415..3199543,3201679..3201782,3202258..3202438,3202627..3202808,3203022..3203628,3203796..3203900,3206336..3206491,3206571..3206651,3206737..3206818,3206895..3207178,3208164..3209252,3214379..3214674,3215878..3215947)
AA seq 1822 aa
MSLQSLEFKFVTEERLQEWKNSSPTIKLPDPVPMTRFLYELCWATIRGELPFQKFRAALD
SVEFAEEHQRGDMSSVLADIVAHLGQDLTISGDYRSRLVKMAKSLVECSLILPRLLQERC
EEEFLWEADLSKTKSQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQGGLDA
MNETTSVVTISIIKSLIGHFDLDPNRVFDIVLECFELYPENNTFYNLIPIFPKSHAAQIL
GFKFQYYQRMEVNAPVPSGLFRLAALLVKANFIDLDSIYVHLLPEDDEAFEYYDALIAKR
VDEANKIGKINLAATGKDLMDDEKQDVTIDLYTALDMENDAVTERASEIEKNQKLGLLIG
FLSVDDWCHAQILFDRLSKLNPVEHIQICEGLFRVIEKTMSPAYAIVSQMYPENSAAFLD
SDRDGVELMSISSAKSSINLPREFFQMLATAGPYLYRDAELLQKVCRVLKAYYLSSQELP
SNGSLVVSPDTNETRKFKEARLRVEEALGSCVLPSLQLIPANPAIGQEIWEVMYLLPYEV
RYRLYGEWEKDDERMPMVLAAKQIAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVL
RTIVHQIEAYRDMITPVVDAFKYLTQLEYDMLEYVVIERLAQGGREKLKDDGLNLSDWLQ
SLASFWGHLCKKYPSMELRGLFQYLVNQLKKGSGIELVLLEELIQQMANVQYTENMTEEQ
LDSMSGSETLRYQATLFGMTRNNKVLSKSTNRLRDSLLPKEEPNLAIPLLLLIAQHRSMV
VINADAPHIKMVSEQFDRCHGTLLQYVDFLYSAISPSTAYAQLIPPLEDLVHKYHLEPEV
AFLIYRPVMRLFRSTTVAEICWPLDIIKDLNVPCIDNEAESSTSSSDIVLPLDSTQKPVM
WSDLLSTVRTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKFRYESEIAKQHAAIKSLEEL
SDNSSIAITKRKKDKERIQELLDRLIAEFQKQEQHVASVRRRLSHEKDKWLSSCPDTLKI
NMEFLQRCIFPRCVFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICSCT
EFEAGRLGRFLYETLKMAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVAYGQFIKVHW
KWSGRITRLLVQCLESTEYLEIRNALIVLTKISGVFPVIRKSGLNLEKRVAKIKGDERED
LKVLATGVAAALAARKNSWVSEEEFGMGHIDLKPTASPAKSLAGNQLLDTLNTAKDQMTR
AKSTDGRPERSEASVILKSDMTQQKRSGLSANGADSQTHSSSALLKPSGVARGTDEPAKF
FSEETDMKVSLKAVVESETRPPQKRGAQNSLGKVPKQDPTKEDGKSGKSIRNTSQQSSAL
ADRDLSAHPPESWQDSSVFNSLTTSNGTIVSASGKVSGSSSRMITSAQGNLPKSDGGPIK
PSGDTVDFPESSAKEQKRTAQVEEQDRLSKRRKGNNEGKDAESIDTRISDKERNFDQRSM
DKAHFPDHEKTASDEQNLNRPEKPKDKTSDKYDKEQREILDRPDKGRGDDNLEKSRDRSM
ERRERSLERMQERTERSVDRSIDKARDDRNKDERNKPRHTEASVDRTHPDERFHGQQNLP
PPPPLPPSFVPHSVGGSRREEEADRRIGNPRHIQRLSPKHDEKERRRSEETVLVSQDDAK
RRREDDFRERKRDERDSASNKVDDRDRDKGNLSKEDTDPNAASKRRKLKRDQPSSSEAGG
EYSPIILPSHGAGISQSFDSRERGERKGVMVQHRAAYMDEAPRMHSKEAVSKINRRETDQ
AHEREWEEDKRQRTEAKRKHRK
NT seq 5469 nt   +upstreamnt  +downstreamnt
atgtctctccaatccctagagttcaagttcgttaccgaggaacgcctccaagaatggaag
aactccagcccaaccatcaagctgcccgatccggtcccgatgacccggttcctctacgaa
ctgtgctgggccacgatacgcggggaattgccgttccagaagtttagggcggcgctggat
tcggtggagttcgcagaggaacatcagaggggggatatgagctccgtgcttgcggatatt
gtggcgcacctgggccaagatcttacaatctcgggggattatcgtagtcgtcttgtcaaa
atggcaaagtcgttggtggagtgttcattaattttgcctaggcttctgcaggagcgctgt
gaggaagaatttctctgggaggctgacctaagtaaaaccaaatctcaagatttaaaggcg
aaagaggttagagttaacacccgccttttgtatcagcaaacaaaattcaatcttttacga
gaagagagcgaggggtatgccaaattggtgacacttctttgtcaaggtggtctagatgcg
atgaatgagactacgtcagtagtgacaatcagcattataaagtcgttaatcggtcatttt
gatctggacccaaatcgtgtttttgatattgtgttagagtgtttcgaactctatcctgag
aacaataccttttataatctcatacctatttttccaaagtcacatgctgctcaaattttg
gggtttaagttccagtattatcagcggatggaagttaatgctcctgttccttctgggctt
ttccggcttgcagctttgctggtgaaagcaaactttattgatcttgatagtatatatgtt
cacttacttccggaggatgatgaggcttttgagtactatgatgcattaattgctaagaga
gtcgatgaggctaacaaaattggaaaaattaatcttgctgctacgggaaaggacctcatg
gatgatgaaaagcaagatgtaactatcgacttatacactgcgcttgacatggaaaatgat
gcagttactgaaagagcttctgagattgagaagaatcagaaacttggtttgctcattggt
ttcctttcggttgatgattggtgtcatgcacagatactctttgatcgtctttccaaacta
aatccagttgagcatatacaaatttgtgagggattatttagggtcattgagaaaactatg
tctccagcatacgctattgtttctcagatgtatcctgaaaactctgcggccttcttagat
tctgatcgtgatggtgtggaattaatgtccatttcttctgctaaatcttctatcaatctt
ccaagagaattctttcagatgcttgctactgctggaccatatctttatcgtgatgctgaa
ttgcttcaaaaggtttgcagagtgttgaaagcatattatctatcttcacaagaattacct
tctaatggttcacttgtggtttctcctgatacaaatgaaacaaggaaatttaaagaagct
aggcttagggttgaagaagcattagggtcttgtgtgcttccttcattgcagttgattcct
gcaaatcctgctattgggcaggagatttgggaagtcatgtatcttcttccttatgaggtt
cgctatcgtttgtatggtgaatgggaaaaggatgatgaacgaatgcctatggttctggct
gcaaagcaaattgcaaagttggacaccagaagaatcttgaaacgacttgcaaaggaaaac
ttgaagcagcttggtcgcatggtagctaaacttgctcacgctaatccaatgactgtactt
cggacaattgtgcaccagattgaggcatacagggatatgataacaccggtggtagatgct
tttaagtacttgacacagctggaatatgatatgttagaatacgttgtaattgaacgtttg
gctcaaggaggacgtgagaagcttaaagatgatggactgaatttgtcagattggcttcag
tcacttgcatccttttggggtcacctgtgtaaaaagtacccttcaatggagttaagaggt
ctttttcagtatcttgttaaccagttgaagaagggctcgggtattgagcttgttttgctg
gaggaacttattcagcaaatggcaaatgtacagtacactgaaaacatgactgaggaacag
cttgattctatgtctggaagtgagactttgcgatatcaagctacactctttgggatgaca
agaaataataaggtattgagtaaatctaccaacagattaagggactccttacttccaaaa
gaagaacctaatctggcaattcctcttttattgctgatagctcagcatcgctccatggtt
gtcataaatgcggatgcaccacatattaaaatggtcagcgagcagtttgacagatgtcat
ggtacacttcttcaatatgttgactttctctatagtgcaatatctccgtctacagcatat
gctcaactgattccccctctggaagaccttgtgcataagtaccatcttgaaccagaggta
gctttccttatataccgacctgtaatgaggctcttcagaagcacaactgtcgctgaaatt
tgttggcctctcgacattatcaaagatcttaacgttccatgtattgacaatgaagcagaa
tcctcaacttcgtcaagtgatattgttttgccccttgattcgacccagaagccagtcatg
tggtctgaccttcttagtacagtacgcacaatgctgccttctaaagcttggaatagcctt
tcccctgatctatatgccaccttttggggcctaacactttatgatctctatgtccctaaa
tttcgctatgaatctgagatcgcgaagcagcatgctgctattaaatcattggaagaactt
tctgacaactcaagtattgcaataacaaaacgtaagaaggacaaagaaaggattcaggag
ctacttgataggttgattgctgagtttcaaaagcaagagcaacatgttgcatcagtgcgt
cgaaggcttagtcatgaaaaggacaagtggctaagttcttgtccagatacattgaagatt
aatatggagtttcttcagcgttgtatattccctcgctgtgttttcagcatgccagatgct
gtatattgcgctatgtttgtgcatactctacattcacttgggacaccatttttcaataca
gttaaccacatcgatgttcttatttgcaaaaccctacagcccatgatctgtagttgcact
gaatttgaagctggcagacttggaagatttctgtatgagacattgaagatggcctatcat
tggaagagtgacgagtctatttatgaacgagaatgtggaaacatgcctggctttgctgta
tattacagatacccaaatagtcaacgtgtagcttatggccagtttatcaaggtgcactgg
aaatggagtggaagaattaccaggttgcttgtgcaatgcttggaatctactgaatatttg
gaaatacgaaacgcacttattgtgttgacaaaaatttctggtgtttttcctgttatccgt
aagagtggtcttaaccttgaaaaaagggtagctaaaatcaaaggggacgaaagagaagat
ctgaaagttttggcaactggtgttgctgcagcattggctgctcgcaagaactcatgggtt
tctgaggaagaatttggcatgggacatattgatctgaaacccacagcatcacctgcgaaa
tctctggctgggaatcagttgttagacactctgaatacagcaaaagatcagatgacacgt
gcaaaatctacagatggtagaccagaaagatctgaagcgagtgtgattttgaaatctgat
atgacacaacaaaagaggagtggcttatctgcaaatggggctgatagtcaaacacattct
tcctctgcgctactcaagccttctggggttgcacggggtacagatgaacctgcaaaattt
ttttctgaggaaacagatatgaaggtatctttgaaggctgtggtggaatccgagacaagg
cctccacaaaagcgtggggcacagaattctcttggaaaggtgccaaaacaggatcctaca
aaagaagatgggaagtctggaaaatcaatcagaaatacaagtcagcaatcctctgctctt
gctgatagggatctttcggcccatccaccagagagttggcaagactctagtgtgttcaat
tctttaactactagcaatggtaccatagtttcagcttcagggaaagtatcaggatcctct
tccagaatgataacttctgcacaaggcaatttaccaaaatctgatggtggacctatcaag
ccttctggtgatactgttgattttcctgagtctagtgctaaagaacaaaagagaactgct
caagttgaagaacaagataggttgagtaaacgcagaaagggaaacaatgaaggcaaggat
gctgagtccattgatactcgaatatcagataaagaacgaaattttgaccaaaggtcaatg
gacaaagctcattttccagatcatgagaagactgcaagtgatgaacaaaatttaaatagg
ccagaaaagccaaaagataaaactagtgataagtatgacaaagagcagagagaaatacta
gatcgacctgataagggccgtggggatgataatcttgaaaaatcaagagataggtcaatg
gaaaggagagaacgttctcttgaacggatgcaagagagaacagagaggagtgttgataga
tccattgataaagctagagatgatagaaataaagatgagaggaacaaacctagacatact
gaggcttccgtagatagaacacatcctgatgaacgtttccatggacaacaaaatttgcct
ccaccaccaccacttcctcctagttttgttcctcattctgttggtgggagccgaagagaa
gaagaggccgatagaagaatcggcaaccctaggcatatacagcggctgtctcctaagcat
gatgaaaaagaaaggaggcgttctgaggagactgttttagtatcacaggatgatgcaaag
cgtagaagagaggatgatttccgtgaaagaaaacgtgacgaacgtgatagtgcatcaaat
aaggtggatgatagggacagagataaaggaaacttatcaaaggaagacactgatcctaat
gcagcttccaagcggcgaaagctcaaaagagaccagccttcatcttctgaagcgggtgga
gaatattcacccattattctaccttctcatggagcgggtatttcccaatcatttgattca
agagaaagaggagagaggaagggggtcatggtgcagcatcgagctgcttacatggatgaa
gcacctaggatgcacagtaaggaagcggtgagcaagatcaatcgtcgagagacagaccaa
gcccatgaaagagagtgggaagaagacaaacgtcagagaactgaagcaaaaaggaagcat
cgaaagtag

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