Typha angustifolia (narrow-leaf cattail): 140768660
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Entry
140768660 CDS
T11061
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140768660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140768660
03009 Ribosome biogenesis [BR:
tang03009
]
140768660
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140768660
Spliceosome [BR:
tang03041
]
Complex A
U1 snRNP components
U1 related factors
140768660
Complex B
140768660
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
Pre-60S particles
Helicases
140768660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
140768660
NCBI-ProteinID:
XP_072965115
LinkDB
All DBs
Position
10:join(4776310..4776365,4776452..4777056,4780847..4781026,4781146..4781307,4781414..4781568,4784303..4784395,4784478..4784563,4784636..4784862,4786126..4786359,4786456..4786556)
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AA seq
632 aa
AA seq
DB search
MNPFDLRYADPTSYRERRSDLMRPPPPLPTLSVPMGSVGLGGAAPFFPHPDKFTAGSDLP
RLPYGGGGGRGSDHGSRGGRGGRVFDGGRGGGGRFSDGARGARGFSSGRGAGGRQEFGGR
EGGGRGFVGRPGAGRFGVGGRGGGAARDFGKPRDDLDSISLPKQNFHDLIPFEKNFYVES
PEMQAMSEHEVLLYRRHREITVEGLDVPKPIRFFHDAGFPDYCLQVIAKYGFVEPTPIQA
QGWPMALKGRDVVGIAETGSGKTLAYLLPALVHVNAQPRLVHGDGPIVLILAPTRELAVQ
IQEEAIKFGSQSNIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEACHTNLRRI
TYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLYWSATWPREVEALARQFLHNPYKIII
GSPDLKANQSINQVVEVIAEHEKYPRLVKLLGELMDGSRILIFLETKKGCDQVTRQLRMD
GWPALSIHGDKAQAERDWVLAEFKSGKSPVMTATDVAARGLDVKDIKCVINYDFPTSLED
YVHRIGRTGRAGAKGTAVTFFTQSNARFARDLVKILRGAGQIVSPALTSMVRSASGNAGG
SGGNFRSRGRGYGNRSLISGSNSIPLGGRRAW
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctttcgatctcagatatgctgatcccacctcatacagagagagacggagcgat
cttatgcggcctccgccgcctcttcctaccctatctgtccctatgggaagcgtcggcctt
ggaggcgctgctcccttctttccccatccggataaatttactgcaggctccgacctaccc
cgcttaccttatggcggtggcggcgggaggggcagcgaccatggatcccgtggtggccgt
ggaggaagggtttttgacggtggaagaggaggaggaggtaggttctccgacggagctcgt
ggtgcccgagggtttagttctgggaggggagctgggggaaggcaagaatttggagggcgt
gagggtggcggaaggggctttgttgggaggcctggggccggcaggtttggtgttggtggt
cgtggtggtggcgccgcaagagattttgggaagccaagagatgatcttgatagtatctcg
ctcccaaaacagaatttccatgacctgatcccgtttgagaagaacttctatgtggagagc
ccggaaatgcaggccatgtcagagcacgaagtgctgctttatcgtcggcaccgggagatc
acagttgaaggacttgacgtgccgaagcccatcaggttctttcatgatgctggttttcca
gattactgcttgcaagtgatagctaaatatgggtttgttgagccaacacctatccaagct
caagggtggcccatggctctaaagggaagagatgtagttggtattgcggagactggttca
gggaagacattggcctatttgctcccagctctagtgcatgtaaatgcacaacctcggcta
gtgcatggtgatggtccaattgttctgatcctagcacctacaagagaactggctgttcag
atccaagaagaagccataaaatttggatcacaatcaaatatcagaagcacttgcatttat
ggtggcgcaccaaaaggaccacaaatacgtgatcttaaaagaggagttgaaattgtcatt
gcgacgcctggtcgactcattgatatgttggaagcttgtcatacaaacctgcgtagaata
acataccttgtattggatgaggcagatcgcatgctggacatgggttttgagcctcagata
cgaaaaattctatcacaaatccggcctgacaggcagacattatattggagtgcgacatgg
cctagagaagtggaggcattggcaagacagtttttgcacaacccatataagataataata
ggatcccctgatcttaaagccaatcaatcaataaatcaggttgtggaagttattgcagag
catgaaaagtatcccaggctggtaaaactcttgggtgaattaatggatgggagccgaatc
ctaatatttcttgagactaagaaaggatgtgaccaggtcactcggcaactcaggatggat
ggttggcctgcattatcaatccatggtgataaagcccaagctgaaagagattgggttctg
gcagagttcaaaagtggcaaaagtccagtaatgactgcaactgatgtagccgcacgtggt
cttgatgtgaaggacataaaatgtgtgatcaattatgatttcccaacaagcctcgaggac
tatgtccacagaattggtcgcactgggcgtgctggcgcgaagggcactgccgtcaccttt
ttcacccaatcaaatgcaaggtttgctagggatcttgtcaaaatcctaagaggagctggc
cagattgtgagtccagcattgacatccatggttaggtcagcaagtggtaatgccggaggt
tctggtgggaatttccgttcgaggggccgaggatatggtaataggtctttgatttctggg
tccaactccatcccacttggagggaggagggcatggtaa
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