KEGG   Typha angustifolia (narrow-leaf cattail): 140769607
Entry
140769607         CDS       T11061                                 
Name
(RefSeq) uncharacterized protein
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140769607
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tang03000]
    140769607
   03019 Messenger RNA biogenesis [BR:tang03019]
    140769607
   04121 Ubiquitin system [BR:tang04121]
    140769607
Enzymes [BR:tang01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     140769607
Transcription factors [BR:tang03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    140769607
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     140769607
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     140769607
Ubiquitin system [BR:tang04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    140769607
SSDB
Motif
Pfam: zf-RING_4 RRM_1 Baculo_IE-1 zf-UDP zf-RING_2 PcfJ FYVE Rtf2
Other DBs
NCBI-GeneID: 140769607
NCBI-ProteinID: XP_072966470
LinkDB
Position
11:complement(join(4764183..4764733,4764809..4764925,4765667..4767318,4767383..4767459,4767651..4767780,4769689..4769780,4769869..4769917,4770000..4770083,4773771..4773883,4773983..4774139,4774241..4774368,4774475..4774574,4774906..4774907))
AA seq 1083 aa
MTTMSDDGDRMCPLCTEEMDLTDQQLKPCKCGYEVCVWCWHHIMEMAEKEDTEGRCPACR
TPYDKERIVGMAASCGRMVAEINAEKRQKFQKAKPKALVEARKHLSGVRVIQRNLVYIIG
LPSNLCDESILEHREYFGQYGKVLKVSISRSTSAAGQQAPVNGTFSVYITYAREEEAVRC
IQAVHNFVLEGKSLRACFGTTKYCHAWLRNMTCSNPDCLYLHDEGCQEDSFTKDEIISAY
TRSRVPQIASNTVQRRSGNILPPPTDDISNGGALLGKHASKNAPNSTSIQTRICHPNSTS
GKSTLPAAASWGLRGSNPRAAAASVTCSRSKQKVETHSSSILHSPIIASNKENSAWHDNV
NTTLMLPESKKVAQLSDIPRHLEPNTPGVEECQTAMPLEAFVDPDLSSELSAWNDDAVVA
SKVCEEGHATDIDGKSMCLDPLKPLIDGGVHHLSTSVASSKVVADVTCTSKITTSCLSSP
LDPTPEFNERDLGLPGRNAIPRASPNQKGLSKQSNSADYDKVREGDNPVDGSIKTLCMDL
YSVSLDRNKGVHILKRDQHQTSVLNTCSAEMPLKQDSGSYSQHIEHLPLPPVSKDDLFSD
RFGSNEVSDWNSELQKQGFAMGSTSVADTNRIGYSDISDQTSSTSYYHHPGDIATLGSKY
SSFVGDSRTLNSKIETRAFPSKGDATILSNGYKENEISTDCRPTTVLQHAGLDCFEDTAK
CAQQFDNRSNLGEAATVDRGENSIISDILSLEFDPWDDSLSLSNNFVNIFGESEKRDGPF
KLSNSWKSQNSNQSRFSFARQEGQGHLLEPSATVNSHEHRLSSLSANSYGNGYQNGILCH
TSEGPSTMEHSIPSFASDRPAGVSKAKISAPPGFSIPSKAPPPGFSSQNRLNQVYEMTNS
ENCLLGKPSLGSYHQAYLSENSDDVEFIDPAILAVGKGRIPGVNDSGLELKSAFPAQLHT
SNNDHRLQLFMQQSVSSHQNLSRLDHIGDRFLPINDNLVSSRFLAQNNSSLSPFAQMQYQ
QPRNSHFADSQWDGWSDVRTSSNMGITDILRNDRFGLNLHPSNEDRQFHIPSSGDLYYRA
FGM
NT seq 3252 nt   +upstreamnt  +downstreamnt
atgacgaccatgagtgatgatggagacaggatgtgccctctctgcacagaggagatggac
ctgactgatcagcaattgaaaccttgcaaatgtggatacgaggtatgtgtctggtgctgg
catcatataatggaaatggctgagaaagaagacaccgaagggcggtgtcctgcttgtcgc
acaccatatgacaaggaaagaattgtgggaatggctgctagctgtggaaggatggtggct
gagattaatgctgagaaaaggcagaaatttcaaaaggcaaagccaaaggcattggtagaa
gcaaggaagcatcttagtggtgtcagagttattcaaagaaacctggtgtacataattgga
ttgccttctaatttatgtgatgaaagtatactagaacacagagaatactttggtcaatac
gggaaagttctgaaggtatcgatttctcgttcaaccagtgcagctggacagcaagcacca
gtaaacggaacattcagtgtgtatattacttatgccagggaagaagaagctgttcgatgt
attcaagctgtacataattttgtcttggaaggaaaatctttaagagcatgttttggtact
acaaagtactgtcatgcatggttgagaaacatgacctgcagcaatccagattgtctctat
ctacatgacgaaggttgccaggaggatagttttactaaagacgagattatttcagcttat
actaggagtagggttccacaaattgcatcaaataccgtgcagagacgttcaggaaatata
ttacctcctcctactgatgatatctctaatggtggagcacttttgggaaaacatgcaagc
aagaatgccccaaatagcacatcaatccaaaccagaatttgtcatcctaatagtacctct
gggaagtctactctaccagcagcagcttcttggggattgcgtggttctaatcccagggct
gccgctgctagtgtaacatgttctcggagcaaacaaaaggtggagacacatagtagttca
atcttgcattctccaatcattgctagcaacaaagagaattctgcttggcatgataatgta
aatacaacacttatgttgcctgaaagcaagaaagtggcacaactgagtgatatacctaga
catttggaacccaacacacctggtgttgaggagtgtcaaacagcaatgcccttagaggct
tttgtagatccagatttaagttctgaactttctgcctggaatgatgatgcagttgtggca
tctaaagtatgtgaggaaggacatgccacagacatagatgggaaatctatgtgcttagat
cctttaaaacctcttattgatggcggggtacaccatctgtccacatcagttgcatcatcc
aaggttgttgcagatgttacatgtacttctaaaattacaacaagctgcttatctagccct
ctagatcccacacctgaatttaatgaaagagatctgggtctccctggaagaaatgcaatt
ccaagggcgagccctaaccagaaaggtctaagtaagcaatctaacagtgctgattatgac
aaagtaagagaaggtgataatcctgttgatggaagtataaagactttgtgcatggatttg
tattcagtaagtttagacaggaataagggtgttcatattttgaagagggaccaacatcaa
acttcagttttaaatacttgttcagctgagatgcccttaaaacaagattcagggtcttat
tcccagcacattgaacatttacctttaccgccagtgagcaaagatgacttattctctgac
cgtttcggttccaatgaagtatctgattggaattcggaattgcaaaagcaaggctttgca
atgggaagtacttctgtggctgataccaacagaattggatattctgatatcagtgatcag
acatcatctacatcttattatcatcatcctggtgatattgctactcttggcagtaagtac
tcttcgtttgttggtgattctagaaccttaaattctaagatagaaacaagggcgttccct
tcaaagggtgatgctactatactatccaatggatacaaggagaatgagattagcactgat
tgtagacctacaacggttcttcaacatgctggtttggattgtttcgaagatacagcaaaa
tgtgcacaacaatttgataacagaagtaatcttggcgaagctgctactgtagatagagga
gagaacagtatcatttctgatatattgtcactagagtttgatccatgggacgactcctta
tccttgtctaacaactttgttaacatatttggggaatctgagaaacgcgatggacctttt
aaattatcaaactcttggaaatcacaaaatagcaaccagtctagattttcatttgccagg
caagaaggtcaaggtcaccttttagaaccttctgcaacagtaaacagccatgaacataga
ctcagctcattgtcagcaaattcttatggaaatggatatcaaaatggtattttatgccat
acttctgaaggacccagtacaatggagcacagcatcccatcttttgcatctgataggcct
gcaggtgtttcaaaggctaaaatatctgcacctcctggattttcaataccaagtaaagca
ccccctccagggttttcttctcaaaatagacttaaccaggtgtatgagatgacaaactca
gaaaattgtctacttggcaagccttcacttggaagttatcatcaagcttatttatcagag
aattctgatgatgtagaatttattgatcctgcaatactggctgtgggcaaagggagaatt
cctggagtaaatgattcaggcttggaattgaaatctgcatttcctgcacagttacataca
tcaaataatgaccacaggcttcaactgttcatgcagcagtctgtgtcttctcatcaaaac
cttagtagactggatcacatcggggataggttcctacctattaatgataatttggtttca
tctcgattcttagcgcaaaacaatagtagtttgtctccatttgcacagatgcaataccaa
caacctagaaactcacacttcgctgatagccagtgggatgggtggagtgatgtaaggacg
agcagtaacatgggcattactgatatcttgaggaatgatagatttgggcttaacttgcat
ccaagcaatgaggaccgccagtttcacataccaagttcaggtgatctctattacagagca
tttggaatgtga

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