Typha angustifolia (narrow-leaf cattail): 140769693
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Entry
140769693 CDS
T11061
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140769693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140769693
Transcription machinery [BR:
tang03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
140769693
Prokaryotic type
Archaeal type
TFB
140769693
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
DUF7573
WHD_GDS1
RB_B
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
140769693
NCBI-ProteinID:
XP_072966615
LinkDB
All DBs
Position
11:join(15092813..15093162,15094100..15094124,15095239..15095368,15095459..15095589,15095751..15095839,15096289..15096365,15096446..15096579)
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AA seq
311 aa
AA seq
DB search
MDAFCPDCKRSTEVVFDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPVRVGG
PTNPLLTDGGLSTVISKPNGSSGEFLSSSLGRWQNRGSNPDRSLILAFRTIATMADRLGL
VATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKK
EIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQKSEELD
IRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPASYA
KEEDLKNLCSP
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgttctgcccggactgcaaacggagcacggaggtggtgtttgaccactcggcc
ggcgacacggtgtgttcggagtgtggccttgtcctcgaagcccactccatcgatgagacc
tccgagtggaggaccttcgccaacgagtccggcgacaatgatccggttcgtgtcggcgga
cccaccaacccccttctcaccgacggcggcctctccaccgttatatcgaagcccaacggc
tcctccggcgagttcctctcctcctcgctcggtcgctggcagaatcgcggatcgaacccg
gaccgatccctaatcctcgccttccgcaccatcgccaccatggccgataggttgggcctt
gttgccactatcaaggatcgagcaaatgaaatttacaagaaagtggaagacctcaagtct
attagagggagaaatcaagatgcaatcttagctgcttgtttatacattgcttgtagacaa
gaggataggcctcgcactgtaaaagaaatttgttctgttgctaacggagcaacaaagaag
gaaattggtcgagcaaaagaattcattgtaaagcagcttgaagttgagatgggtcaatca
atggagatgggtaccatccatgcaggagatttcctgagacgtttctgctcacatcttggc
atgacaaatcaagctgttaaagctgctcaggaggcagtccagaagtcagaagagcttgat
ataaggaggagccctatctctatcgcagcagccgttatttacatgataactcagctatca
gatgacaagaagccccttaaagatatatctttagctactggagtcgcagaaggcaccatc
agaaattcctacaaggatctctacccttatgcttcgagactcattccagcctcttatgcc
aaggaggaagacctaaagaatctctgcagcccgtag
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