| Entry |
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| Name |
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
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| KO |
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| Organism |
tang Typha angustifolia (narrow-leaf cattail)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:tang00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140769833
09122 Translation
03013 Nucleocytoplasmic transport
140769833
03015 mRNA surveillance pathway
140769833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:tang03019]
140769833
03041 Spliceosome [BR:tang03041]
140769833
Enzymes [BR:tang01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140769833
Messenger RNA biogenesis [BR:tang03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140769833
Spliceosome [BR:tang03041]
Complex C
Other components
EJC/TREX
140769833
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140769833
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
11:complement(join(149669..149679,150228..150291,150380..150463,150551..150695,151466..151650,151725..151781,152483..152601,152739..152970,153089..153261,155919..156019,156494..156609))
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| AA seq |
428 aa
MGEAKDNETYEEELLDYEEDEEKAPDGVAAKTGGEVAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLAGQVAALV
LCHTRELAYQICHEFERFSTYLPDTKIAVFYGGVHISKHKDILKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHEKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLYECNFPSICIHSGMSQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS |
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| NT seq |
1287 nt +upstreamnt +downstreamnt
atgggagaggcaaaggacaacgaaacttacgaggaggagcttctcgactacgaagaggac
gaggagaaggctcccgacggtgtcgcggccaagactggcggtgaagtcgcgaaaaagggc
tatgtcggaattcacagttctggtttcagagacttcctattaaagccagagctacttcgt
gcaatcgttgattcagggtttgagcatccttctgaagtacaacatgaatgcatccctcaa
gctattcttggaatggatgtgatctgccaagcaaagtctggaatggggaaaacagctgta
tttgttctttcaactcttcaacagattgagcctcttgctggccaagttgctgcacttgtt
ttatgccacactagggaattagcttaccagatatgccatgagttcgagaggttcagtaca
tacttgccagacactaaaattgctgtcttctatgggggggttcacatttcaaagcataag
gatatactgaagaatgagtgccctcatattgtagttggtactccaggaaggatactagca
ttagctagagataaagatctttccttgaagaatgtgaggcacttcattcttgatgaatgt
gataaaatgctcgagtcacttgacatgcggagagatgtgcaggagatatttaaaatgaca
cctcatgagaagcaagtcatgatgttttcagcaacactcagcaaggagattcgccctgtt
tgcaagagatttatgcaagatccaatggaaatttatgttgatgatgaggcaaagctgacc
ctgcatggtctagttcagcactacatcaaattgagcgagttggagaagaaccggaaattg
aatgatcttttggatgctttggacttcaatcaagttgtgatttttgtcaaaagtgtcaac
agagcagcggagcttaacaagttactttatgagtgcaactttccatcaatctgcattcac
tctggaatgtcacaagaagaaaggttgacaaggtacaaaaacttcaaggaagggcacaaa
agaatccttgtagctactgatttggttggccgggggattgatatcgagcgcgtcaacatt
gtaataaattatgatatgccagattctgctgatacctacttgcacagggttggacgggct
ggtcgctttggaaccaagggacttgctatcacttttgtgtcatccgcgtctgattcagac
gtccttaatcaggtgcaagaaaggtttgaggttgacataaaagagctgccagagcaaatt
gatacttctacatacatgccttcttga |
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