Typha angustifolia (narrow-leaf cattail): 140770049
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Entry
140770049 CDS
T11061
Name
(RefSeq) RNA polymerase sigma factor SigC
KO
K03093
RNA polymerase sigma-I factor
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140770049
Transcription machinery [BR:
tang03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
140770049
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
PRP9_N
DUF763
LytTR
Motif
Other DBs
NCBI-GeneID:
140770049
NCBI-ProteinID:
XP_072967130
LinkDB
All DBs
Position
11:complement(join(881020..881301,882049..882249,882354..882494,882579..882809,882897..883478,883575..883738,884530..884632))
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AA seq
567 aa
AA seq
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MGFRFMAVSRNWASPIPSPCCTRLNYQLFHQASLSRSRAIPFESGRILPIHIFLEGSDSQ
IGDSLKVFACSFGQLQHTEDISGDAKDMKVNVDRMPLNDMHDMFESLNMMDENLSAYSTS
LSASNSLQFNLLMENLNKIEDILDGKDLVRLQRDILVHIRQLGALKLFHAYLSRTVTVPT
VLESDFLLTEHFANCHLEFPVNEQKADVIVRTGKNEERKLRRQRASEKATRLSYLTVSSK
KLKAEKSTFSSPISVDEKAGLSALRSRRSALARNESEMSEGVKEVVNLERTRRELEKEIG
RPPSYARWAEAAGIDQETLQQRLQFGWYCRDKLIKSTRSLVMYLAKNYRGMGIAFDDLLQ
AGKVGVLNGAERFDNKKGYKFSTYVQYWIRKSILALVARHSRGIHIPVRMDNMINRIQKA
RRALRSREGRYPQDEEIAKFTGLSLANVRLARKCSRPVGSIDQDIGSEWCTKFMEITPDT
TVESSDDVVMKQHMRENLLKLLEELQPRERQVLIQRHGLGDGRCKSLEEIGRLFHVSKER
IRKIEKIAMSKIRREEVQRELRHYQHL
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgggttttcgtttcatggcggtctccaggaattgggcttctccgatcccatctccttgc
tgcaccagacttaactaccagctatttcaccaggcttctttatcaagaagcagggcaatt
ccctttgaatctggaagaatattacctatacatatctttctggagggaagcgacagccag
attggagacagtctaaaggtatttgcatgttcattcgggcaacttcaacacactgaagac
atatctggtgatgcgaaagatatgaaggtgaacgtagatagaatgcccctcaatgacatg
catgatatgtttgaatctcttaacatgatggatgagaatttatctgcttattctacaagt
ttgtcagcaagcaactctttacagtttaacttactaatggaaaacctcaacaaaatagaa
gatatcttggatggtaaggacttggtaaggctgcaaagagatattctcgtacatatacga
caacttggtgctctgaaactatttcatgcatatctctccaggactgttacggtaccaact
gtacttgaatcagatttcctactcacagagcactttgcaaactgtcacctagagttccca
gtaaatgagcaaaaggccgatgtaattgttcgaactggaaaaaatgaagagaggaaacta
aggagacaacgagcatcagaaaaggcaactcgcttgtcctatttgacagtatcttcaaaa
aaattaaaggctgagaaatctactttttcctcaccaattagtgtagacgagaaggcggga
ttatcagcgttaagaagtagaaggtccgcactagcacgaaatgaatcagaaatgtcggag
ggggttaaggaagttgtgaacctagaaagaaccagaagagaactggagaaggaaattggg
cgaccacccagttatgccagatgggctgaagctgctggaattgatcaggaaacattgcag
cagcgtttgcagtttggctggtattgtagagacaaacttataaaaagtacccgctctctg
gtcatgtaccttgcaaagaattacaggggaatggggattgcctttgatgatctgcttcag
gcagggaaggtgggtgtcctgaatggtgctgagaggtttgacaacaagaaagggtacaaa
ttctcaacctatgtccaatattggattagaaaatctatattggcactggtagcacgacat
tcaagagggatccacatacctgttagaatggataatatgattaatcggatacaaaaggct
aggagagccctccgtagcagggaaggaaggtacccacaagatgaggagattgctaagttc
actggtctatcattagctaatgttagattagctaggaagtgctctcgccctgttggttca
attgatcaagatattggaagcgaatggtgcacaaagttcatggaaataaccccagatacc
acggtcgaatcttctgatgacgtcgtcatgaagcagcatatgagagaaaaccttcttaag
cttctggaagaactgcaacccagagagaggcaagtactaatacaaagacatgggttggga
gatggtagatgcaagtcgctggaggagattggcaggcttttccatgtgtctaaggaacgt
atacgaaaaatagagaagatagccatgtccaagataagaagggaggaggtacaaagagaa
ttgagacactatcagcacttgtag
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