Typha angustifolia (narrow-leaf cattail): 140770196
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Entry
140770196 CDS
T11061
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03082
ATP-dependent chromatin remodeling
tang03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140770196
03083 Polycomb repressive complex
140770196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tang03036
]
140770196
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
140770196
Histone modification proteins
HAT complexes
HATB complex
140770196
HDAC complexes
Sin3A-HDAC complex
140770196
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
140770196
PRC2.2
140770196
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
140770196
Heterochromatin formation proteins
Other heterochromatin formation proteins
140770196
Chromatin remodeling factors
NuRD complex
140770196
NuRF complex
140770196
NuRF complex (fruit fly)
140770196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
140770196
NCBI-ProteinID:
XP_072967352
LinkDB
All DBs
Position
11:join(355804..355925,356172..356235,356980..357066,357384..357446,357966..358031,358128..358202,358412..358487,358932..359148,359420..359501,359723..359796,359979..360090,360212..360286,360739..360818,361472..361571,361988..362089)
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AA seq
464 aa
AA seq
DB search
MRERGGRTTVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLS
EQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELP
QNSKIVATHTDSPDVLIWDVEAQPNRHAVLGAAESRPDLILTGHQENAEFALAMCPTEPF
VLSGGKDKSVVLWSIQDHISSIMDSASKSPGSPGSSGSKAAAKSGNEKSSDSPTIGPRGV
YHGHEDTVEDVQFCPSSPQEFCSVGDDSCLILWDARVGTSPVVKVEKAHSADLHCVDWNP
HDDNLILTGSADNSVRMFDRRNLTTDGVGSPIFKFEGHKAAVLCVQWSPDKTSVFGSAAE
DGFLNVWDHEKVGKKKEHVGTRMPNSPPGLFFQHAGHRDKVVDFHWNSSDPWTIVSVSDD
GESTGGGGTLQIWRMSDLIYRPEEEVIAELEKFKSHLTTCAPKT
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgagggagagaggtgggagaacgacggtggacgagaggtacacgcagtggaaatccctc
gttcccgtcctctacgactggctcgcgaatcacaacctcgtctggccttctctctcttgc
cggtggggtccgcagcttgagcaggcgacgtacaagaatcgccagcgtctgtacctctca
gagcagactgatggtagtgttcccaatactcttgttatagcaaattgtgaagttgtcaaa
ccaagagttgcagctgcagagcatatatctcagttcaatgaagaagcacgatctcctttt
gtgaagaagtacaaaactattatacatcctggagaggtcaacagaatcagggagcttcct
caaaatagtaaaatagtggcaacacatactgacagtcctgatgtacttatttgggatgtt
gaggcgcaacccaatcggcatgctgtgcttggagctgcagagtctcgtccagatctgata
ttgacaggccatcaagaaaatgcagagtttgctcttgccatgtgtccgacagaaccattt
gtactttctggaggtaaggacaaatcagtcgtcttgtggagcatacaggatcatatttct
tcgataatggactcagcctccaaatctcccgggtcacctgggagctcaggcagtaaggct
gctgcaaaatctggtaatgaaaaaagttcagacagtcctacaattggacctcgaggtgtg
tatcatgggcatgaggataccgttgaagatgtgcaattctgtccttctagtccacaggaa
ttctgtagcgtgggtgatgattcctgcctcattctttgggatgcccgagttggtactagt
cctgttgtcaaggttgagaaggctcacagtgctgatcttcactgtgttgactggaatccc
catgatgataaccttattttgactggatctgcagataattctgtccgtatgtttgaccgc
cgaaatctaactactgatggtgttggatcccccatttttaaatttgaaggccacaaagct
gctgttctgtgtgtgcagtggtctcctgacaaaacttctgtttttggaagtgctgctgaa
gatggttttctaaacgtttgggatcatgaaaaggtggggaagaagaaggaacacgttgga
acaaggatgcccaattcaccgccaggtttattctttcagcatgcaggccacagagataaa
gttgtagacttccactggaattcatctgatccatggactattgttagtgtatctgatgat
ggtgagagtactggcggcggcggcacattgcagatatggcgaatgagcgatttaatctat
agaccagaagaagaggtcatagcggagctggagaagttcaaatcccacttgactacatgc
gcccccaagacttaa
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integrated database retrieval system
