Typha angustifolia (narrow-leaf cattail): 140770278
Help
Entry
140770278 CDS
T11061
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140770278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140770278
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
140770278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
140770278
NCBI-ProteinID:
XP_072967477
LinkDB
All DBs
Position
11:join(521970..522024,522151..522406,522538..522583,523416..523509,524131..524204,524377..524463,524555..524665,524754..524825)
Genome browser
AA seq
264 aa
AA seq
DB search
MVCMLHYSPYLPSSMIVDEFATPSHIRRLTGKKKLSKTIPLPNPKLCCLLLLLVVIILSE
MEIENDESSVVDIYPLSCYYFGSKDAVPDKDETLAERIQRFKSNFAAHGLRTCVEGVLLV
ELFQQPHVLLLQVKNSYFKLPGGRLRPGERDIDGLRRKLSRKLSLDDNGVHDDWQIGQCI
GMWWKSEFETLPFPYLPPNTRRPKECVKLFLVRLPMSRQFVVPKNLKMLAVPLCQIHDNA
EVYGPIISGIPHLLSKFSFNIINV
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgcatgcttcactatagtccatatcttccatcatcgatgattgtagacgaattc
gccacgccatcacatatccgccgactcacagggaagaagaaattatcaaaaacaatccct
cttcctaatcccaaactctgctgcttgctgctgctgttggtagtaataattctgagtgag
atggagatcgagaacgatgaatccagcgtggtcgacatatacccacttagttgctactac
ttcggctccaaagatgcggtcccggacaaggatgagacgttggcggaaagaattcagcgc
ttcaaatccaactttgcggcacatgggttgaggacttgcgtcgagggcgttctcctggtt
gaattgtttcagcaaccacatgtgctattgttgcaagtaaagaactcgtactttaagctc
ccaggaggccgtttaagacctggtgaacgagatattgatggattgagacgcaagctttca
agaaagctatcccttgatgacaatggagtccatgatgactggcagatagggcagtgcatc
ggaatgtggtggaagtcggagtttgaaacattaccatttccatatctgccacctaatacg
cgcagaccaaaggaatgcgtaaaacttttcttggttaggctgccaatgtccaggcaattt
gttgtgccaaaaaacttgaagatgcttgctgtgcccttgtgccagattcatgacaatgca
gaggtatatggtccaattatatctggaattccgcatctgctatcaaagttctccttcaat
atcatcaatgtttga
DBGET
integrated database retrieval system
