Typha angustifolia (narrow-leaf cattail): 140770539
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Entry
140770539 CDS
T11061
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140770539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140770539
03009 Ribosome biogenesis [BR:
tang03009
]
140770539
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140770539
Spliceosome [BR:
tang03041
]
Complex A
U1 snRNP components
U1 related factors
140770539
Complex B
140770539
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
Pre-60S particles
Helicases
140770539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Mito_fiss_reg
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140770539
NCBI-ProteinID:
XP_072967866
LinkDB
All DBs
Position
11:join(16426405..16426857,16427154..16427222,16427916..16428185,16428563..16428913,16429244..16429521,16432709..16433083,16433460..16434162)
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AA seq
832 aa
AA seq
DB search
MGGGAAPRYAPEDPTLPKPWRGLVDGTTGYLYYWNPETNVTQYERPQEELPPPPPPPLLP
PPPPRLPSKSASVIGSSSTSAAVSADQHRHHHHHHHHRRDSNDDDTRYHRRLSKDSHDLR
TTSARGHGLSSVAGAVSSVEAYRHQHEIIITGDDVPAPFTTFESTGFPAEILKEVHHAGF
SYPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFVHLKRLRNNSKMGPTVLVLAP
TRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMR
RINLRQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTLMFTATWPKEVRRIAADLLV
HAIQVNIGRIDELVANNAITQYVEVITPLEKLRRLEQILRSQDPGSKVIIFCSTKRMCDQ
LARTLTRQFGAAAIHGDKSQVERDRVLGHFRTGRSPILVATDVAARGLDIKDIRVVINYD
FPTGVEDYVHRIGRTGRAGATGVSYTFFCDQDSKYAADLVKVLEGANQRVPQELRVMVSR
GGYGGKSRRWGPRSSVREGDRTHTGRNDLSHSGRGVRGLAPSGRSESGHGYNDHEPHGRY
SRGYQDGHEPDVHDHKPIGKGRSRSRSRSGSHRYSPSPKRLHVGGHHSRSRSRSQSRSWN
YDHRPSRSRSHSASHDFDQLVAGSSLVQEESPLSDKGTSPTIPRTGDPVLLIPSFDQKEK
SPSLDAENMGKIDLDHFPSLQKEGSGSPCNYVNGKAGASNSPERWLEGSSGSQGHFERTR
ERSVSPASMHCNKDREEEEEGMIPGDEDGEILPEDGMKLPTLLAAQRTDPLN
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaggtgcggcaccgcgttatgcgccggaagaccctaccctgccgaaaccgtgg
cgtgggctggttgatggcaccacgggatacctctactattggaatccagagaccaacgtc
acccaatatgagcgcccccaggaggagctgccccctccccctccccctcctttgttgccc
cctccccctccacgcctaccttctaagtctgcctcggtcatcggatcatcctccacttct
gctgccgtctctgctgatcagcaccgccatcaccaccaccaccaccaccaccgtcgtgat
tccaatgatgatgacacccgctatcaccgtcgtctttcaaaggattcacacgatctgagg
actacatctgccagggggcatggattgtcatcagttgcgggagctgtgtcctctgtagaa
gcttaccgtcatcagcatgagattattatcaccggagatgatgtgccagcaccattcaca
acatttgagtctacaggatttccagcagaaattcttaaagaggtacaccatgctggtttc
tcatatcccaccccaatccaggctcaatcatggccaattgcattacaaagtcgtgatatt
gtagctattgcaaagacagggtcaggcaagacattgggctatcttattccaggatttgtt
catctcaaacgcctccgaaacaactctaagatgggtccaactgttttggttctggcacca
acaagggagttggcaacacagattcaagatgaagctgtgaagtttgggagatcatcaaga
atttcttgcacgtgtctatatggaggtgccccaaagggtccccagttgagagatttagat
cgtggagttgatgtcgttgttgcaactcctggaagattgaatgacatactggaaatgaga
agaataaatcttcgtcaggtttcatatcttgtccttgatgaggctgatcgtatgttggac
atggggtttgaaccacaaataaggaaaattgtgaaagagataccacatcgccgccaaaca
cttatgttcactgctacatggccaaaagaagtcaggagaattgcagcggatctccttgtt
catgctattcaggtgaacattggaagaattgacgagcttgttgccaacaatgctattact
cagtatgtggaagtgatcacacctctggagaaacttagacggttggaacagatcctgcga
tctcaggatccaggctccaaggtcataatattttgctctactaagaggatgtgtgatcag
cttgctagaactcttactcggcagtttggtgcagctgctattcatggcgacaaatctcag
gttgagagagatagggttttaggccattttcggacaggaagatctcccatactagtagca
actgatgttgctgcccgaggcttggacataaaagatatcagggttgtcatcaactatgat
tttcccactggtgtcgaagactatgtccacaggataggaaggactggtagggcaggtgca
actggtgtgtcttacacatttttctgtgatcaagattcaaaatatgcagcagatcttgtg
aaagttctggaaggggcaaaccagcgtgttcctcaggaattacgggttatggtttcacgt
ggtggatatggcggcaagtctcgccgttggggtcctcgttctagtgttcgtgaaggagac
cgcacacatactggacgcaatgatttaagccatagtggaaggggtgtgcgaggattggca
ccttcaggaagatctgagagcggtcatgggtataacgatcatgagcctcatggcaggtac
agtcgtggttaccaagatggtcatgaaccagatgtccatgatcacaagcctataggtaaa
ggccgaagccgcagcagaagtcgcagcgggagtcataggtatagcccaagccctaagagg
cttcatgttggagggcaccatagtaggagccggagccggagccagagccggagctggaac
tatgaccacagacccagcaggagtcgtagccacagtgctagccatgactttgaccagctt
gttgctggttctagcctggtacaggaggagtcaccactctctgacaagggaacttcacct
actattcctcgaactggggatcctgttttgctaatcccaagctttgatcagaaagaaaaa
tcaccatcccttgatgctgagaacatgggaaagattgatcttgatcacttccctagctta
caaaaggaaggatctgggtccccttgcaattatgtgaacggcaaggcaggagcatcaaac
agcccagaaaggtggcttgaaggatcttcaggttctcaagggcactttgaaaggactaga
gaaagatctgtctcaccagcttcaatgcattgtaataaggacagggaggaagaagaggaa
ggtatgatccctggagatgaggatggtgaaatactccctgaggatggtatgaaattgcct
acgttgttagcagctcagcgaactgatccacttaattaa
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