Typha angustifolia (narrow-leaf cattail): 140771002
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Entry
140771002 CDS
T11061
Name
(RefSeq) uncharacterized protein
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140771002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140771002
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140771002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
140771002
NCBI-ProteinID:
XP_072968449
LinkDB
All DBs
Position
11:join(3412240..3412437,3413248..3413316,3413584..3413673,3415115..3415157,3416418..3416536,3416992..3417087,3417826..3418016,3418181..3418250,3419076..3419168)
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AA seq
322 aa
AA seq
DB search
MAKFPRFPAVKPAFTGGAGRGRGGAPSSSSSSSSSSLPAGLGPVEPLLLNLLKRDLRANA
VLELSKRRDHCVYAPLLWNSFGSITVLLQEIVSIYPYLSPPKLSLDASIRVCNALTLLQS
VASHPVTRISFLMAHIHLYLYPFLNTTSKETSFENLRISSLGVIGGLVNGLAKVRDSEAI
AFLLHSEIIPLCLRAMNNGTEIKKTLAVFILQKILLDDVGLLHICSRPDRFLCVCQVLAS
VVASLAEQPCARLLKYTISCYLRLSEYPRANEILKAYLPDMLKDGTFNDSLREDPAIFVL
LRRLLNHLRIAAAPPSQSTGRT
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggccaaattcccgcgcttccccgctgtcaaacccgcgttcactgggggcgccggaaga
ggacgtggcggcgcgccttcgtcgtcttcttcttcttcttcttcttctcttccggctggc
ttgggccccgtggagccgttgctgctcaatctcctgaagagggatttgagggcgaatgct
gtcctcgagctttccaagagaagagatcattgtgtttatgctccactattgtggaactct
tttggctctattaccgtgctcctgcaggagatagtttcaatatatccttatctctcacct
cctaaactctcacttgacgcatctattcgagtttgcaatgcacttactcttcttcagtct
gtagcttctcatcctgtgacaagaatctctttcctcatggcacatatacatttgtatttg
tacccatttcttaatactactagtaaggaaacatccttcgagaatttacgaataagcagc
ttgggagttataggtggccttgtgaatggccttgcgaaggttcgtgattctgaggctatt
gcctttctcctgcatagtgagataattccattatgtctacgtgctatgaacaatggcaca
gaaattaaaaagacactcgccgtctttattcttcaaaagatactactggatgatgttggg
cttctgcatatttgttccagaccggaccgatttctttgtgtttgtcaagtgcttgcttca
gttgttgcatcacttgctgaacagccctgtgctaggctgctgaagtatacaataagttgt
tatttaaggctgtcagaatatccgagagcgaacgaaatcctgaaggcttaccttccagat
atgctaaaagatggaacttttaatgactcccttcgtgaggaccctgcaatttttgtattg
ctccgtcgacttctgaaccatttgagaatagctgctgctcccccaagccaatcgacaggg
aggacttaa
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