Typha angustifolia (narrow-leaf cattail): 140771339
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Entry
140771339 CDS
T11061
Name
(RefSeq) cell division control protein 48 homolog C-like
KO
K14571
ribosome biogenesis ATPase
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
140771339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tang03009
]
140771339
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
140771339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_14
AAA_5
AAA_22
AAA_16
AAA_33
RNA_helicase
TIP49
AAA_28
AAA_2
Rad17
nSTAND3
NPHP3_N
AAA_17
AAA_18
IstB_IS21
Bac_DnaA
ATPase_2
NACHT
Viral_helicase1
ABC_tran
TsaE
Mg_chelatase
Nucleolin_bd
NB-ARC
Cytidylate_kin2
AAA_3
NTPase_1
Parvo_NS1
AAA_19
SKI
AAA_11
Vps4_C
tRNA_lig_kinase
CPT
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
140771339
NCBI-ProteinID:
XP_072968937
LinkDB
All DBs
Position
11:complement(join(14827500..14827547,14828094..14828234,14828332..14828533,14828617..14828681,14828837..14828902,14829650..14829754,14829888..14830004,14830715..14830867,14831164..14831777,14832735..14833641))
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AA seq
805 aa
AA seq
DB search
MGKRMRRGRGGRSPSSAFYSGLLRRRICEAGLGGSFDADAVASQLRSQFPEYQRVKLQPF
GVRVKETLDDLRRQSASGSSDDSEDDDGSGGRGDGSRKMLSRSDLSEQRLLRAESEHLRR
RKRNQQESSDDSTSTSDDAIFEDKVEPEFDLMKSMLRDSYSKKSVLNSKSRKEDDNMEIE
VAQDKPRRMETADGSGVETPVVEKSRKGGRFVEVDDREEGKAGPKFRDLGGMKGVIEELM
MDVIVPLCYPQLPRWLGVRPTAGILLHGPPGCGKTTLAHAIANETGVPFYKISAPEVVSG
VSGASEENIRDLFKKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDEFHQ
TVGSSDANLNSETSEDKPGYVLVIGATNRPDAVDQALRRPGRFDREIALGVPDENARVEI
LSMLTRNLRLEGHFNLFKIARSTPGFVGADLKALVNKAGNLAMKRIIDKRKCQLSHELVG
ENTEDWWRQPWNAGEMESLSITMGDFEEAAKMVQPSLRREGFSSIPNVTWDDVGGLNSLR
KVFERYIVQRIKNPEDYEEFGVNLEAGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE
LLNKYVGESESEVRKIFTRARTNSPCVLFFDEVDALTTKRGKEGGWVVERLLNQLLIELD
GADQRQGVYVIGATNRIEVMDPAVLRPGRFGKVLFVPLPGANERESIMKAHARNKPIAAD
VDWDSLAHRVECENLTGADLAALMNEAAMAALEEKLDFAEKGMASNFPCLIKTMHFERAL
ANIKPSVSEKQRSYYSAISQKFRAS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcggatgagacgaggaagaggaggacggtcgccgtcatcggcgttctactct
ggtctcctccgccgacggatctgcgaggctggactcggaggctccttcgatgccgacgct
gtggctagtcagctccggtctcagttccctgagtaccaacgcgtcaagctccagccgttt
ggcgtccgcgttaaggaaaccctggatgatctccgccgtcagtctgcttctggaagcagc
gacgacagtgaggacgacgacggcagcggcgggaggggagacggatcacggaagatgctg
agccgctccgatctctccgagcagcggctcctccgcgccgagtccgagcacctgcgccgc
aggaaacggaatcagcaagaatcgtcggatgattcgacatcgacatccgatgatgccatc
ttcgaagacaaggttgagccggagttcgacctaatgaaatccatgcttagggatagttac
agcaagaaatcagtacttaattcgaagagcaggaaggaggatgataacatggagattgag
gtggcacaggacaagccgaggaggatggagacagctgatgggagcggggtcgagacccca
gtggttgagaagtcgaggaaaggtggcagatttgttgaggtggatgacagagaagagggg
aaggcggggccgaagtttcgagatctaggtgggatgaaaggcgtaatcgaggagttgatg
atggatgtaattgtgcctttgtgctatccacaactgcctagatggcttggcgtgaggccg
acagcagggatactgcttcatgggccaccagggtgtgggaagacgacacttgcccatgcg
attgcgaatgagactggtgtgcccttctataagatatctgctcctgaagtggtctctggg
gtttccggtgcttctgaagaaaatatacgagaccttttcaagaaggcatatcgtactgct
ccatcaattgtctttattgatgagattgatgccattgcatccaagagggagaacttgcag
agggagatggaacgccgaatagtcacacaattaatgacttgcatggatgaattccaccaa
acagttggatcaagtgatgctaatttaaattcagaaacatctgaagacaaacctggatat
gttcttgtaattggagctacgaacagacctgatgcggtggaccaagcattgcgaagacct
gggaggtttgaccgtgagatagctttgggtgtccctgatgagaatgcacgggttgagatc
ctatctatgcttactcggaaccttaggcttgagggtcatttcaacctcttcaaaatagcg
agatctacaccaggttttgttggagctgatctgaaagctttggtgaataaagcagggaat
ctggccatgaagagaataatagataagaggaaatgccaactttctcatgagctggtagga
gaaaacacagaagattggtggaggcagccttggaatgctggtgaaatggagagccttagt
attaccatgggtgattttgaggaagcagctaaaatggttcaaccatctttgagaagagaa
ggattttcctctatacctaatgttacatgggatgatgttggtggtcttaattcattaagg
aaagtatttgagcgttacattgttcagcgaatcaagaaccctgaagattacgaggaattt
ggagtaaatttggaggctggatttttgctatatgggcctccaggttgtggcaaaacattg
atagcaaaagctgtagcaaatgaagcaggggctaattttatacatattaaggggcctgaa
ttgttgaataagtatgttggtgagagcgaatcagaagtaagaaaaatatttacccgtgcg
cgaactaactctccctgcgtactgttctttgatgaggtagatgctttaacaacaaagagg
ggcaaagaaggaggatgggttgttgagcgtctcctgaaccagctactcattgagcttgat
ggtgctgatcagcggcaaggtgtttatgtcattggagctacaaacagaatagaggtgatg
gatcctgctgtcttacgaccaggcagatttgggaaagtcctttttgtacctctacctgga
gccaatgaacgtgaatcaattatgaaagcacatgctcgtaataagccaattgcagctgat
gtagattgggacagtttagcacatagggtagagtgtgagaatcttacaggggctgatttg
gctgctctgatgaatgaagctgccatggctgcgttggaggaaaagctggatttcgctgag
aaagggatggcaagtaactttccatgtcttatcaagacaatgcattttgagcgagctttg
gcaaatataaaaccatcggtgtcagaaaagcaaagaagctactacagcgcaatatctcaa
aagttcagagcttcttga
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