KEGG   Typha angustifolia (narrow-leaf cattail): 140771442
Entry
140771442         CDS       T11061                                 
Name
(RefSeq) sm-like protein LSM8 isoform X1
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140771442
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140771442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140771442
   03041 Spliceosome [BR:tang03041]
    140771442
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     140771442
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     140771442
Spliceosome [BR:tang03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    140771442
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 140771442
NCBI-ProteinID: XP_072969105
LinkDB
Position
11:complement(join(3153638..3153728,3153844..3153896,3154609..3154683,3154840..3154935,3155037..3155096))
AA seq 124 aa
MSAGPGLESLVDRELPLANLMPIFTQRGMLIEYLFLSAETISIITNDGRNIVGVLKGFDQ
ATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDANLDLSKLRAHPLK
PVIH
NT seq 375 nt   +upstreamnt  +downstreamnt
atgtcagctggtcctggacttgaatcacttgtcgaccgtgagctacctcttgctaatttg
atgcccatttttactcagagaggaatgcttattgagtatctttttttatctgcagagaca
atatctatcattacaaatgatgggcgtaatattgttggggttttaaaaggctttgatcag
gctactaatatcattctggatgagtcacacgagagggtatactccacaaaggaaggtgtg
caacaacttgtcctaggcctctacattattaggggtgataacataagcgtcgtgggtgag
ttagatgaagagctggatgcgaatcttgacctgtcaaagcttagggcacatcctctcaag
cccgtcatccattaa

DBGET integrated database retrieval system