KEGG   Typha angustifolia (narrow-leaf cattail): 140771645
Entry
140771645         CDS       T11061                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013  Nucleocytoplasmic transport
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140771645
  09122 Translation
   03013 Nucleocytoplasmic transport
    140771645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140771645
   03041 Spliceosome [BR:tang03041]
    140771645
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     140771645
Spliceosome [BR:tang03041]
 Complex C
  Other components
   EJC/TREX
    140771645
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    140771645
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_WDR3_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_IFT140_1st eIF2A WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_EML Beta-prop_TEP1_C DSE1_N WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 WD40_RFWD3 TRM82_WD Beta-prop_IFT122_2nd Tricorn_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_IFT80_2nd Beta-prop_WDR41 Beta-prop_Nup120_160 PAC11 CNH Beta-prop_WDR11_1st Me-amine-dh_H
Other DBs
NCBI-GeneID: 140771645
NCBI-ProteinID: XP_072969317
LinkDB
Position
12:join(8811930..8811995,8812161..8812256,8812974..8813103,8813703..8813794,8814370..8814438,8814889..8814946,8815087..8815186,8815709..8815795,8815965..8816043,8816143..8816275,8816581..8816615)
AA seq 314 aa
MEDKAISFKNLGSREYQGHKKKVHSVAWNCSGTKLASGSVDHTARVWNIDPHGHGKVKDV
ELKGHTDSVDQLCWDPKHPDIVATAAGDKTVRLWDARSGKCTQNVELSGENINITYKHDG
THIAVGNKEDELTILDVRKFRPIHRQKFNYEINEIAWNKTGDLFFITTGNGTVEVLAYPS
LKLRHNLIAHTAGCYCIAMDPLGRYFAVGSADSLVSLWNVKEMLCIKTFTKLEWPVRTIS
FNCTGEYIASASEDPFIDIANVQTGRSVHQIPSKAAMNSVEWNPRYNLLAYAGDDKNKYQ
ADEGVFRIFGFEST
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaagataaggcgattagcttcaaaaacctgggctcgcgggagtaccaggggcacaag
aagaaggtgcattcggtggcttggaattgttcgggcacgaagcttgcttctggctccgtc
gatcacactgctcgcgtctggaatattgatcctcatggccatggcaaggttaaggatgtc
gaactgaaaggtcatacagatagtgtagatcaactatgttgggacccaaaacaccctgat
atagttgcaactgcagcaggggataagacagttcgtctttgggatgctcgaagtggaaaa
tgtactcaaaatgttgaacttagtggagaaaatatcaacatcacatacaaacatgatggt
actcacatagctgtaggcaacaaggaggacgagttaacaatactggatgtccgtaaattt
aggcctattcatagacaaaagttcaattacgagattaatgagatagcatggaataaaact
ggagacttatttttcatcactacaggaaatggtactgttgaggtgttggcatatccatcc
cttaagttgcgtcacaatttgattgctcacacagcaggctgctattgcatcgcaatggat
cccctaggaaggtactttgctgttggaagtgctgattcgctagtcagcctctggaatgtc
aaagagatgttgtgcatcaaaacattcacaaaacttgaatggcccgtgagaacaattagt
ttcaattgcacaggagaatatattgcttcagccagtgaagatccttttattgatattgcc
aatgttcaaactgggcgatcagtccatcaaataccaagtaaggcagcaatgaacagtgtc
gagtggaatcccaggtacaaccttctagcttacgcaggagatgacaagaacaaatatcag
gctgatgaaggtgtatttcgaatattcggtttcgagagcacatga

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