KEGG   Typha angustifolia (narrow-leaf cattail): 140771910
Entry
140771910         CDS       T11061                                 
Name
(RefSeq) SART-1 family protein DOT2
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140771910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tang03041]
    140771910
   04121 Ubiquitin system [BR:tang04121]
    140771910
Spliceosome [BR:tang03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    140771910
Ubiquitin system [BR:tang04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    140771910
SSDB
Motif
Pfam: SART-1
Other DBs
NCBI-GeneID: 140771910
NCBI-ProteinID: XP_072969839
LinkDB
Position
12:complement(join(9940654..9940734,9941173..9941257,9942244..9942464,9942960..9943321,9944315..9944924,9945377..9945436,9945518..9945584,9945666..9945762,9945856..9945969,9946193..9946244,9946342..9946483,9946677..9947473))
AA seq 895 aa
MADMELGEVRMRAHEDSRYGDRSRGVRDEEMDELEEKESGRHRSKDKKKGRREEKEHGSR
ERRKEDRSDSGKDRDNEKEYDRNREKSRDKVRDKDYDRDSKHRDREREKERKEERDRVRE
KASDQGRDKEKEKDRERGRNREREREKERDRSKDRERDVERSKNREKEKVKDKEKDRERS
KTEKEKAREKPRERDVDRSWEKEQDRSRARDREKENRGKEVEKDGKVTSNSVKDGAFTGK
EESRYEDVVQEKQIESTSLLEERLVKIKEERLKDKSDGASDILSWVSKSRRLEEKRNAEK
EKTLRLSKALEEQDNILEESDDDEAAGNSRDNLAGVKILHGLDKVIEGGAVVLTLKDQNI
LAGGDINEDVDMLENVEIGEQKQRDEAYRVAKKKTGIYDDKFSDDTGSRRPILPQYDDEI
EDEGVTLDEAGRFSGEAEKRLEELRKRIEGSSTQIAYEDLTSTGRISSDYYTPDEMLQFK
KPKKKKSLRKKEKLDLDALESEAIAAGLGAGDLGSRKDLRRQIAREEEERAEAEKRSNAY
QSAIAKAEEASKVLRQEQTLTVTSGEEDDLVFGEDYEDLQRSLEQARKLALRKQDEGIVS
VPQAVALLATENKEQDNTSSIEGEAQENKVVITEMEEFVLGLQLNEDARKPEAEDVFMDE
DDEPKHIQQEAQAEVVELAEVKENNVTEELIDEEEPDVVPDEIIHEVAVGKGLAGALKLL
HDRGTLSEGVDLGGRNMDKKKSKLVGIYDNDGTKEIRIDRTDEFGRILTPKEAFRIISHK
FHGKGPGKMKQEKRMKQYQEDLKTKQMKASDTPLLAMEKMREAQARMKTPYLVLSGHVKP
GQTSDPRSGFATVEKDHLGSLTPMLGDKKVEHFLGIKRSSEPGSMGPPPPKRPKN
NT seq 2688 nt   +upstreamnt  +downstreamnt
atggcggacatggagttgggggaggtaagaatgagggcgcatgaggattctaggtatgga
gacagatctagaggagttagggatgaggagatggatgagttagaggagaaggaatcaggg
aggcacagaagcaaggataagaagaagggaaggcgagaagagaaagagcacggaagccgg
gaaaggaggaaagaggacaggtcggactccggtaaggacagagacaacgagaaggaatat
gatcggaatagagagaagagcagagacaaggttagggataaggattacgatagggatagt
aaacatagagatagggagcgggagaaggagagaaaggaagaacgagaccgagtgcgtgag
aaagcaagcgatcaaggaagggataaggagaaggagaaggatcgcgagaggggaaggaac
agagagagggaaagggagaaggagcgggataggtcgaaagatagggaaagggatgtagag
aggagtaaaaatcgagagaaggagaaggtgaaggataaagaaaaggatagggagaggagt
aagacagagaaggagaaggctagggagaaacctagggagagggatgttgatagaagttgg
gagaaggagcaagataggtcaagagcaagggatcgagagaaggaaaatagagggaaagaa
gttgaaaaggatggcaaagtgacaagcaattctgtgaaagatggggcctttacagggaag
gaggaaagtcgatatgaggatgttgttcaagaaaaacagatcgagtcgacctcactgctt
gaagagcgtcttgtaaagattaaagaagaaagactgaaagacaaatccgatggtgcttct
gatatcttatcatgggtcagtaagagtcggcggcttgaggagaagaggaatgctgagaag
gagaaaactttacgtctctcaaaagctctggaggagcaggataacatactagaagaaagt
gatgatgatgaggctgctggaaatagcagagacaacttagcaggagtgaaaattcttcat
ggtcttgataaagtaattgaaggtggagctgttgtcttgactctaaaggatcagaacatt
cttgctggtggtgacatcaatgaagatgtcgatatgcttgaaaatgtggagataggagag
cagaagcagagagatgaagcttacagggttgcaaaaaaaaagacaggaatatatgatgac
aaatttagcgatgacacagggtctcgaagaccaatacttccacaatatgatgatgagatt
gaagacgagggagtaacactggatgaagctgggcgcttttctggtgaagcagagaaaaga
ttagaagagcttcgcaaaaggattgaaggtagctccactcaaatagcttatgaagacctc
acttccacagggaggatatcttcagattattacactcctgatgagatgcttcaatttaaa
aagccaaagaaaaagaaatccctgaggaagaaagaaaaattggatttggatgcccttgaa
tcagaagctattgctgctggactgggtgctggagatcttggttctcggaaagatttaagg
cggcaaattgcaagggaggaagaggagagagctgaggctgaaaagagaagtaatgcatac
cagtcagctattgcaaaggcagaagaagcatcaaaagttttgcgccaggagcaaacttta
actgtgacatccggggaggaagatgatctagtttttggtgaagattatgaggatcttcaa
agatctcttgagcaggcaagaaagctcgccctcaggaagcaggatgagggaattgtttct
gttcctcaggcagttgcactcttagctacagaaaataaggaacaagataatactagctct
atagaaggagaagcacaggagaataaagttgtgataacagagatggaagagtttgtatta
ggtctacagttaaatgaagatgctcgtaaacctgaagcggaagatgttttcatggatgaa
gatgacgaacctaaacatatacagcaggaagcacaagctgaggttgttgaattggcagaa
gtgaaagagaataatgttactgaagaactcattgatgaagaggagccagacgttgtccca
gatgagattattcatgaggttgctgttggaaaaggtttagcaggtgcattaaagttgctt
cacgatagaggaacacttagtgaaggagtagatttgggtggaagaaatatggacaaaaag
aaaagcaagcttgttgggatctatgataatgatggtacaaaggaaattcgcattgacagg
actgatgaatttggtcgaatattgacaccgaaggaggcctttcggattatttcacataaa
tttcatggaaagggaccaggaaaaatgaagcaggaaaaacgcatgaagcagtatcaggag
gatttgaaaacaaaacagatgaaagcttctgacacaccattattggccatggaaaaaatg
agggaagctcaagctaggatgaaaactccttaccttgttttgagcggacatgttaaacca
gggcaaaccagtgaccctagaagcggctttgctacagttgaaaaagatcacctggggagc
ctgacacccatgcttggggacaaaaaggttgaacattttctgggaatcaagcgaagttct
gagccaggaagcatgggtccgcctccacctaaaaggccaaagaattga

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