Typha angustifolia (narrow-leaf cattail): 140772708
Help
Entry
140772708 CDS
T11061
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang00040
Pentose and glucuronate interconversions
tang01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
140772708
Enzymes [BR:
tang01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
140772708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
VWC2L_C
Motif
Other DBs
NCBI-GeneID:
140772708
NCBI-ProteinID:
XP_072971008
LinkDB
All DBs
Position
12:complement(join(3994571..3994792,3995640..3995778,3997195..3997938,3998075..3998211))
Genome browser
AA seq
413 aa
AA seq
DB search
MKSPSQTLLLHLIFLASILTNPICPSPTPPSAAVQDPELVVQEVVRSINASRRRLGSSVS
CRTGNPIDDCWRCDPNWEKNRQRLADCSIGFGRNAIGGRDGDIYVVTDSGDDDPINPKPG
TLRYAVIRDEPLWITFGHDMTIKLKEELIMNSYKTLDGRGANVHIAGGPCITVQYVTNVI
IHGLHIHDCKPGGNAYVRDSPEHYGWRTVSDGDGVSIFGGSHVWVDHCTLSSCTDGLIDA
IHGSTAITISNNYMTHHDKVMLLGHSDTLMADKSMQVTIAFNHFGEGLVQRMPRCRHGYF
HVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNNEFAKEVTKREDSSESEWKKWNWRSE
GDLLLNGAFFTPSGAGASSSYAKASSLGARPSSSVGSVTLSAGALSCKKGSRC
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctccatcacaaacacttctcctccatctcatcttcctcgcctcaatcctcaca
aaccccatctgtccttctcccacccctccgtcagcagcagttcaagaccctgaactagta
gtacaagaagtcgtgaggagcatcaatgcttcacggcggcgactgggcagcagcgtctca
tgccgcaccggcaacccgatcgatgactgctggcggtgcgaccccaactgggagaaaaac
aggcagcgcctagcggattgctccatcgggttcggccgtaacgcaatcggaggccgcgac
ggagacatctacgtcgtgaccgacagcggcgatgacgacccgataaaccccaagccaggc
acgctccgctacgccgtcatccgagacgagccgctgtggatcaccttcggccacgacatg
acaatcaagctcaaggaggagctcatcatgaactcgtataaaaccctcgatggccgcggc
gcaaatgtgcacatcgccggtgggccgtgcatcacggtgcagtacgtgacgaacgtcatc
attcatggcctccacatccacgactgcaagcccgggggcaacgcgtacgtgcgcgactcg
ccggagcattacgggtggcgcacggtgtcggatggcgatggtgtgtccatcttcgggggg
agccacgtatgggttgatcattgcacgctgtcgagctgcaccgatgggcttatcgatgcc
atccatggatcgacggccatcaccatctctaataactacatgacccaccacgacaaggtc
atgttgctgggacacagtgatacgttgatggcggacaagagcatgcaggtcaccattgcg
ttcaatcacttcggagaagggctcgtgcagaggatgcccaggtgtcggcatggatatttc
catgtggtgaataatgactacacccactgggaaatgtacgccatcggaggcagcgctgcg
cccaccatcaatagtcaagggaacagattcttggcgccaaacaacgagttcgccaaagag
gtgaccaagcgtgaggattcctccgagagtgagtggaagaagtggaactggagatcggaa
ggagatctgctgcttaatggagcattcttcacaccatcgggagccggagcctcatcaagc
tatgcaaaagcctctagcttaggagccaggccttcctcttcggttggctccgttactctg
tcggctggggcactctcatgcaagaaaggctctcgctgttaa
DBGET
integrated database retrieval system
