Typha angustifolia (narrow-leaf cattail): 140772815
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Entry
140772815 CDS
T11061
Name
(RefSeq) uncharacterized protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013
Nucleocytoplasmic transport
tang03015
mRNA surveillance pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140772815
09122 Translation
03013 Nucleocytoplasmic transport
140772815
03015 mRNA surveillance pathway
140772815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140772815
03041 Spliceosome [BR:
tang03041
]
140772815
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140772815
Spliceosome [BR:
tang03041
]
Complex C
Other components
EJC/TREX
140772815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
140772815
NCBI-ProteinID:
XP_072971113
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All DBs
Position
13:complement(join(945278..945742,946349..946500,946588..946785,947431..948772))
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AA seq
718 aa
AA seq
DB search
MPSPFPVLNNKPIDQWKVTELKDELRRRRLPIKGLKDDLVRRLDEALRTEMEATKEEEEE
IGNGFDTDSSLQGNANQEEAQPSQEIYTEVVAHTTVVTNAGAKTVDTIDSIPDVNEGIKF
QDEYTTPARGSHKAAVETVGGTTLEDSVAQSVIPDDYTTRDSVIPEEEHKVPIIPAEEHK
DSKIPKEEHKVSIIPEEEHKVSIIPEEEHKDSKIPEEEHKDSIIPEEEHKDPMIPKEEHK
DTKLPDEDVKPSMSESKNQVSEVSPDLGFQVKNESISTDSISIIEKSKLKDNLNADNFDL
ELEVVKPEMVQPSSSIPLLGGDLQQPDDNKELVKNQVSLEEIDYKCTTNVDSTKKEDSAD
GGSPEKLNLDRSSGDESMEEDVTESKQIESNIKPHELDKMIDVSGGHDVKEKIHSDAATS
GFPPEKREVHLEEKTRPAASTEKRKIEATEAVGNNETFKRQRRWNSENVKVPEQQTTSAG
GSIAPKDVFQPTPKRSFTRSDSALSVDSPKERIVPPSQKTATTSLRIDRFVRPFTLKAVQ
ELLGKTGSVCSFWMDHIKTHCYVTYSSVEEAVATRNAVYDLQWPPNGGNHLLADFVDPQE
VKLRLDAPLQSPAPVSPSPTTPKVSPFQQTPSNQTIPRQNAPRQQLPPPPLPPPPPLSNP
PSMREKLPPPPPKKAEPPALTLDDLFKKTKASPRIYYLPLSEEQVATKVASQSKSTRE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaccattccccgtgctcaataacaagccaattgatcaatggaaggttaccgag
ttaaaggacgagctaaggaggaggagattgccaataaaaggtttgaaagatgatttggtg
aggaggttggatgaagctcttcgaactgagatggaggcgaccaaagaagaagaagaagaa
attggtaatggttttgacactgattcatctcttcagggtaatgccaaccaggaggaagca
cagccatcacaagaaatatatactgaagttgtcgcacatacaactgttgtaactaatgct
ggtgctaaaacagttgatactattgatagcattccagatgtcaatgaaggaattaaattc
caggatgaatatacaacgcctgctagaggatcccacaaagcagctgtggaaacagttggt
ggaactaccctggaagacagtgtggctcaaagtgtgattcccgatgattatacaactcga
gattctgtaatacctgaagaagagcacaaggttcctataatacctgcagaagagcataag
gattctaaaatacccaaagaagagcataaggtttctataatacctgaagaagagcataag
gtttctataatacctgaagaagagcacaaggattctaaaatacccgaagaagagcacaag
gattctataatacctgaagaagagcataaggatcctatgatacccaaagaagagcacaag
gatactaagcttcccgatgaggatgtcaagcctagcatgtcggaatcaaaaaatcaggta
tctgaggtcagcccagatttagggtttcaagtaaaaaatgagtctatttctactgattct
atatcaattattgaaaagagtaaactaaaggataacttaaatgctgataattttgattta
gaactagaagttgttaagccggagatggtgcaaccatcatccagcattcctctcttaggt
ggcgatttacagcaaccggatgataacaaagaactggttaagaaccaggtctctttggaa
gaaatagattacaaatgtactactaatgtggactctaccaagaaggaagatagtgctgat
gggggttctccagaaaaattaaatttagacagaagttcgggtgatgaatcaatggaagag
gatgtgacagaaagtaagcagattgagtccaatattaagcctcatgaacttgataaaatg
attgatgttagcggtggccatgatgtgaaagaaaagatccactctgatgctgctactagt
ggattccctcctgaaaagagggaagttcatttggaggagaaaactaggccagcagcttct
actgagaagaggaaaattgaagctacggaagctgtcggcaacaatgaaacttttaagcga
cagcgcagatggaactcagagaatgttaaagttccagaacaacaaacaactagtgctggt
ggttccattgcacctaaggatgtgttccaacctactccaaaacgttctttcaccaggtct
gactcggctctgagtgtagattccccaaaggaacgcattgtaccaccgtcacagaagact
gcaactacttctctgagaattgatcggtttgtgcggccctttactctgaaggcagtgcag
gagctgcttggcaaaactgggtctgtttgtagtttttggatggatcacattaagacccac
tgctatgtgacgtattcatcagtggaggaagctgtggcaactcggaatgctgtttatgat
cttcagtggcctcccaatggtggaaaccatctattagctgactttgttgatccacaagag
gtaaagctacgtcttgatgccccactgcaatctccggcacctgttagtcccagcccaact
acaccgaaggtctccccctttcaacaaaccccaagtaatcaaactatccctcgtcaaaat
gctccaaggcagcagttacctcctccaccacttcctccaccaccacctctgtctaacccg
ccttccatgagggaaaaactcccaccgccccctccaaagaaagccgaaccacctgctctg
acattggatgatctttttaagaaaacaaaggcctctccaaggatatactacttacccttg
tcagaagagcaggtggcaactaaagtagcatcacagagcaaaagcaccagggagtaa
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