Typha angustifolia (narrow-leaf cattail): 140772934
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Entry
140772934 CDS
T11061
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase component HRD3
KO
K14026
SEL1 protein
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
140772934
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Gene cluster
GFIT
Motif
Pfam:
Sel1
Motif
Other DBs
NCBI-GeneID:
140772934
NCBI-ProteinID:
XP_072971298
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Position
13:complement(join(13071594..13071785,13072535..13072777,13073722..13074045,13077126..13077341,13078780..13079271,13079351..13079914))
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AA seq
676 aa
AA seq
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MARRRPPRLVRLLLFLFAVSSLLPFSSSVRPFVIVISNDDLIKDSSSGDSFDDSSDDWDD
FSDSTRADDHPIDPGSWLSILDPFSSSPFLNSSSDSDPLESLFISGIRSMLSAASSADPS
AMAAAASQIEAAASAGLPHAQSTLAFLHSHGILRPQNRPKSFLFHQFAAEGGNLQSKMAL
GYTFFRQDMHEKAVVLYAELAEAALTSFVISKDPPVIEAIRLHSGTEENKDVLRKSRGED
DEDFQITEYQAQRGNSMSMFKIGLLYYYGLRGLRRDLKKAHYWFSKSVEKGDTSSLELLG
EMYARGAGVERNYTKAFECLSLAVKHQYYSAYNGLGYLYVKGYGVEKKNLTKAKEYFEIA
AANKESGGHYNLGVLYLKGLGVKRDVRAACNLFLTAANDGQPKALYQVAKLFQKGIGLKK
NLYMATLLYKAVAERGPWSSLSRWALESYLKGDMGKALLLYSRMAELGYEVAQSNAAWIL
DKYEEQSVCMGESGFCTDTERHIRAHSLWWQASEQGNEHAALLIGDAYYYGRGIERDYER
AAEAYMHAQSQSNAQAMFNLGYMHEHGFGLPLDLHLAKRYYDQALQIDAQAKLPVTLALT
SLWLRKNYAGSFLVKMIDSLPEVYPRIQEWVEDVLMDEGNATILTLFACLLTVLYLRERQ
RRQAAVLVQQPDDLVN
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccggcgacctccccgccttgtccgcctcctcctcttcctcttcgccgtatcc
tccctcctccccttctcctcttccgtccgccccttcgtcatcgtcatctccaacgacgac
ctcatcaaagattcctcctccggcgattcctttgacgactcctccgacgactgggacgac
ttctctgactccacccgtgccgatgaccacccaatagaccctggatcctggctctccatc
ctcgaccccttctcctcctctccctttctcaactcctcctccgattccgatccactggaa
tccctattcatctccggcatccgttccatgctctctgccgcctcctccgccgacccctct
gccatggccgccgccgcctcccaaatcgaagccgctgcctccgccggcctcccccacgcc
caatctacgctcgccttcctccactcccacggcatccttcgtccccagaaccgtcccaag
tccttcctcttccaccagtttgctgccgagggcggtaatctccagtccaagatggccctt
ggctacaccttcttccggcaggatatgcacgagaaggcagttgtgctgtatgcggagctg
gcggaggcggctctgacgagctttgtcatatcgaaggatccgccggtgattgaggcgatc
cgcctccacagcgggacggaggagaacaaggatgttttgcgaaaatcacggggcgaggac
gacgaggacttccagatcacggagtaccaggcgcagagagggaattccatgtcaatgttt
aagatcggattgctgtactactatggattgagggggttgagaagggatctgaagaaagcg
cattactggttctctaagtctgtggagaagggggacacgagctcgttggagttgctcggg
gagatgtatgccagaggggctggagtggagaggaattacacgaaagcatttgagtgtctg
tcgctggcggtcaagcatcagtattactcggcctataatggattgggttatctttacgtt
aaaggctatggtgtggagaagaaaaacctaaccaaggcaaaagaatattttgagatagct
gctgcgaacaaagaatctggaggacattacaacctaggagtgctgtacctcaagggtctt
ggtgtaaaaagagatgtgagagcagcatgcaaccttttcctcacagcagctaatgatggt
caaccaaaggccctctatcaagtggctaagttgttccaaaaaggcatagggctcaagaag
aatctctacatggctacactcctgtacaaagctgtagctgagaggggaccttggagctcc
ctatcaagatgggctctggagtcctacttgaagggtgacatgggaaaagcactcctcttg
tattctagaatggcagaacttggatacgaggtagcacaaagcaatgctgcatggatcctt
gataaatatgaggagcagagtgtttgtatgggagaatctggcttttgcacagatactgaa
aggcatattcgtgcacattctttatggtggcaagcatctgagcagggtaatgagcatgct
gctttgctgataggagatgcttactattatggcaggggtattgagagagactacgagcga
gcagcagaagcttacatgcatgcccaatcgcaatccaatgctcaggccatgtttaatctt
gggtacatgcatgagcatggcttcgggcttccactagatcttcatttggcaaaacgatat
tatgatcaggcccttcagattgatgctcaagcaaagttacctgtgacactcgcacttaca
agcttgtggttaagaaaaaactatgctggcagcttcctggtaaaaatgattgattcacta
ccagaggtttacccaagaattcaggaatgggtggaggatgtactcatggacgaaggaaat
gctacaatattgacactctttgcttgcctcttgacggtcctctacttgcgggaacggcag
aggcggcaagcggcagtgcttgttcagcaacccgacgacctggtcaattaa
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