KEGG   Typha angustifolia (narrow-leaf cattail): 140773036
Entry
140773036         CDS       T11061                                 
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03030  DNA replication
tang03410  Base excision repair
tang03420  Nucleotide excision repair
tang03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    140773036
   03410 Base excision repair
    140773036
   03420 Nucleotide excision repair
    140773036
   03430 Mismatch repair
    140773036
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tang03032]
    140773036
   03400 DNA repair and recombination proteins [BR:tang03400]
    140773036
DNA replication proteins [BR:tang03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    140773036
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     140773036
SSDB
Motif
Pfam: RFC1 BRCT AAA RCF1-5-like_lid Rad17 AAA_22 AAA_30 PTCB-BRCT AAA_assoc_2 RsgA_GTPase Gp44_lid AAA_19 nSTAND3 BRCT_2 AAA_5 DNAX_ATPase_lid Sigma54_activ_2 AAA_18 NPHP3_N NTPase_1 AAA_16 AAA_14 Zeta_toxin 5_3_exonuc SurA_N AAA_17
Other DBs
NCBI-GeneID: 140773036
NCBI-ProteinID: XP_072971459
LinkDB
Position
13:join(3373098..3373100,3373220..3373345,3373840..3374325,3374436..3374503,3374618..3374693,3374768..3374829,3374910..3375061,3376220..3376383,3376455..3376643,3376767..3376888,3376967..3377174,3377486..3377539,3377907..3378076,3379538..3379628,3380614..3380795,3380900..3380939,3382705..3382829,3382989..3383061,3384223..3384315,3385822..3386068,3386326..3386388,3386507..3386640)
AA seq 975 aa
MSSDIRRWFMKQHDKGNATVSNPAKKPALAIPEKPSTPVADKPELGGQNSSGRRKTSKYF
ASSTTVGQTSKDEKATAKTIAKRKTQNNNEESEDEIKPSPAKKLHKNEDDDFVSPSEKKK
SAESKPTRKSKGASSAQITKLAADMDDDDGDQLDDKNAVTPAKGAGRGRGGRGSGAAAGG
RGRGAGRGGFMNFGERKDPPHKGEKEVPEGAPECLAGLTFVISGTLDSLEREEAEDLIKR
HGGRVTGSVSKKTSFLLVDEDIGGRKSSKAKELSIPFLTEDGLFDMIRKSKPAKVPADED
HKKNDSEKLKKPQIKSSPNKVDKRDDQISSVGRKDAERSAKASISPDKRKAQADKHSSLT
WTEKYRPKVPNDIIGNQSLVKQLHDWLTNWNEQFLHAGQKGKGKKLADSGSKKALLISGS
PGIGKSTAAKLVSQMLGFQAIEVNASDSRGKADAKIGKGIGGSMSNSIKELVSNESLSYG
NDRSKHAKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLINYC
TLLNFRKPTKQQMAKRLMQIATAEGLQVNEIALEELANRVNGDMRMALNQLQYMSLSHSV
IKYDDIRERLLSSAKDEDISPFTAVDKLFGFDGGRLRMDERIDLSMSDPDLVPLIIQENY
INYRPSAIGKDDNGIKRMNFLAQTAESIANGDIVNVQIRRYRQWQLSQASSFASSIIPAA
LMHGHRETLEPGERNFNRFGGWLGKNSTAGKNLRLLEDVHARILASSEAKMDREMLRVDY
FTLLLRQLTDPLRSMSKDAAVAKVVEFMDAYSLSQEDFDTIVELSKFQGHPNPLDGIQPA
VKAALTKAYKQGSSSRVIRAADLITLPGIKKAPKKRIAAILEPVENDLPRENGETLVESE
EENLSDAEDNDGTVTAGESMPQLDLQSDKSKGIQVQLDLKSNGSSKAKKTPASKSRGSES
AEKVGRSSGGGKRKR
NT seq 2928 nt   +upstreamnt  +downstreamnt
atgtcgtcggatataaggagatggtttatgaagcaacatgacaaaggaaatgcgactgta
tcgaaccctgcgaagaaacccgctttggcgatccctgagaaaccctctacccccgtggca
gataagccggagctaggaggtcaaaattcttcaggaagaaggaaaacaagcaaatatttt
gcatcttctactacagtaggacaaacatccaaagatgaaaaggcgactgcgaaaaccatt
gcaaaaaggaaaacccaaaacaataatgaggagtctgaggatgagattaaaccctcacca
gcaaagaagcttcataagaatgaagatgatgactttgtgtcaccttctgagaagaagaag
tcagctgagtctaaacctaccaggaagtcaaagggtgcctcaagtgcacaaatcactaaa
ttggctgctgatatggatgatgatgatggagaccagcttgatgataaaaatgctgtaact
cccgcgaaaggtgctggaaggggcagaggtggaagaggatcaggagcagctgctggagga
agagggagaggggctgggagaggtggtttcatgaactttggtgaaaggaaggatccaccg
cacaaaggggagaaggaagtcccggagggtgctcctgagtgtttagctggtctgacattt
gtcataagtggcacacttgatagcttggaacgggaggaggcagaggatttaattaaacgt
catggtggtcgagttactgggtctgttagcaaaaagacgagttttcttttagttgatgaa
gatattggtggtagaaaatcttcaaaagccaaagagctgagtatcccctttttgactgag
gatggattatttgatatgatccggaaatcaaagcctgcaaaagtaccagcagatgaagat
cataaaaagaatgactcagaaaagttaaagaagccacagataaagagcagtcctaataaa
gttgataagagagatgatcaaattagttctgttggaagaaaagatgctgaaagaagtgct
aaagcaagcatctctcctgataagcggaaagcgcaagctgacaaacacagttcactgaca
tggacggagaaataccgtccaaaggttccaaatgacataattggcaaccagtcacttgtt
aagcagctccatgattggttaacaaactggaacgaacaatttcttcatgctggccaaaaa
gggaaggggaaaaagctagctgacagtggatctaagaaagctctacttataagtggctca
cctgggattggtaaaagcactgcagcaaagttggtctctcagatgcttggattccaagct
attgaggttaatgcaagcgatagccgtggaaaggcagatgccaaaattggtaaagggatt
ggtggaagcatgtcaaattctatcaaagaacttgtcagcaatgagtccctgagttatggc
aatgatcggtcgaagcatgcaaaatctgtattaatcatggatgaggttgatggaatgtca
gctggagatagaggtggagtggctgatcttattgccagcataaaaatatccaagattcct
attatttgtatttgtaatgatcggtacagtcagaagctcaagagtcttattaactactgc
acgctgctcaactttaggaagcctactaagcaacagatggcaaaaaggttgatgcaaatt
gcaactgctgaaggtcttcaagttaatgagatcgcactcgaagaacttgcaaatagagta
aatggggatatgcggatggcactaaatcagttgcagtatatgagcctctcacattcagta
atcaaatatgacgatataagagagcgtcttcttagtagcgcaaaagatgaagatatttca
ccctttacagctgttgacaagcttttcggtttcgatggtgggaggttgcgaatggatgag
aggattgatttgagcatgagtgatcctgatttagtccctcttatcattcaggaaaattat
attaattatcgaccgagtgctattgggaaggatgataatggaatcaaaagaatgaatttt
cttgcccagacagctgagagtatagcaaatggggatattgttaatgtacaaatcagacga
tatcgacagtggcaactatctcaagcttcatcatttgcatcatctataataccggctgct
ttgatgcatgggcacagggagactcttgagccgggagagcgtaacttcaatagatttggt
ggatggttgggaaagaactcaacggcaggaaaaaatttgaggcttttggaggatgtccat
gcccgtattcttgcttcctccgaagctaaaatggacagggagatgttgcgggtggattac
ttcactcttctattgagacaattgactgaccctctgcggagtatgtctaaggatgctgct
gtggcgaaagttgtggagtttatggatgcttattctttaagtcaagaggactttgataca
attgttgagctatctaagttccaggggcacccaaatccactggatggtatccaacctgct
gttaaagctgcattgaccaaggcttataagcaaggcagtagctctcgtgttatccgagcg
gcagacttgatcactcttccgggcattaagaaggctccaaaaaaacggatagcagcaata
ttagagccagtggagaatgatttaccaagggaaaatggagagacattggtggaaagtgaa
gaagaaaatttgtctgatgctgaagataatgatggaaccgtaactgctggggaatcaatg
ccacagctcgatcttcaaagtgataaatccaaaggaattcaagtgcagcttgatttaaaa
agcaacgggagctcgaaagcgaagaagacccccgcaagcaaatcgagaggctctgaatct
gctgagaaggtgggtcgaagttcaggaggtggaaagagaaaaaggtaa

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