KEGG   Typha angustifolia (narrow-leaf cattail): 140773099
Entry
140773099         CDS       T11061                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140773099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140773099
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     140773099
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     140773099
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40_WDHD1_1st WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_Vps41 WDR55 Beta-prop_EML_2 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 140773099
NCBI-ProteinID: XP_072971572
LinkDB
Position
13:join(2994540..2995292,2995923..2995972,2996066..2996222,2996414..2996632,2997720..2997848,2998399..2999994,3000314..3000673,3000751..3000870,3001210..3001380,3001517..3001678,3001823..3001966,3002101..3002409)
AA seq 1389 aa
MASPAGNPNHPGPFELSKLFKPPSGNPNPNPKPSAPPPFQPPYQSPSPPPSSGQFSYPAA
TPPFQHRPFIQYSPEVFHRPGVSYPNPNPNLNPNPNAGARLMQLLGNAAPAPAPLETAIS
MPPPSSIAPEFASPPPATAPTLQAVPSAPPAILAGMQPSPPLRAPSSKMPRGRHLGGDRT
VYDVDSRLPGESQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNVNT
ALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRVFIWKIDEGSDDENKPQITGKVIVAI
QIIGDGESYHPRICWHSHKQEILFVGIGNRVLKIDTTKVGRGKEFTAEEPLKCPMEKLLD
GVQLIGKHDGDVTELSISQWMTTRLASSSKDGTVKIWEDRRAVPLATLRPHDGQAVNSVS
FLTSPQRPDHINLITAGPLNREIKLWASESEEGWLLPSDSESWCCTQTLDLRSSLEPRFE
EGFFNQVVVLPRASLIILANAKKNAIYAVHVDFGPYPALTCMDYIADFIVAMPILSLTGT
NECPPEGEQVVKLYCVQTMAIQQYMLDLSQCLPTQTENAELGREASVPRVIDVPFSEVAA
HPSIRPALSDLPVGSASPKPSPTSSIAESAGATSYPLTSVTSEVTSGCDLSTSDLEVKPS
APLLSFAEADAMQVTTSPIALNFDFSGRLPAIESPSEGSEQGPSLRNHDGNHSVYGGAVD
RSETLLSDAPDAPSVKEISGKGEPKAGQTDTSFVPKSHLMFKMAGNATHLITPSEILSGA
ISSSESTFVTQGLKSEVTIQDMIDNNNSESAEMEVKTVTESRLNQNMDLDTAKVPQVALE
GSTEKLFKTSEYNVEMIKGGPPLADSDNMEEPRFIDDSALPPGTHDEVQNSAKDIAKIEA
TSVSTTSQSPSTKGKQQKTKTSQVSVPSSPSLTPFNFTDSPTELGNKESSPTDTVLPQIS
AMHDMLNQLVAMQKDLQKQMSGIVAVPVGKEGKRMEASLARSLDKSIKANADALWARFQE
ENAKRERNERDQMQQITNMIASSMNKDLPMMLERALKKELSASGPVVARAITPVIDKTIS
SAIADTFQRGIGDKAVNQLDKSVNSKLEATVMRQIQAQFQTSGKQALQDTLRSCLESSVV
PAFEQSCRVMFEQVDAAFQKGMSEHTAASLQQLEAAHTPLTLTLREAINSASSITHNLSS
ELVDGQRKLLALVASGSTKALNPTAMQANNGPMAGLPEMALSVQQVEAPLDPTKELNRLI
SERKYEEAFTMALQRSDVSMVSWLCSQVDLHEMLYMVPLPLSQGVLLSLLQQLACDIGNE
TSRKVVWMTDVAVSITPTDQMISVHVHPIFEQVYNILAHQMSQPIPKGLEGANIRVLMHV
INSVLRSCK
NT seq 4170 nt   +upstreamnt  +downstreamnt
atggcctcccccgcgggaaaccctaaccacccgggtcccttcgagctcagcaagctcttc
aagccgccctccggaaaccctaaccctaaccccaagcctagcgcacctcctccgttccag
ccgccgtaccagtcgccgtccccgccgccctcatccggccagttctcctaccccgctgcc
accccgccgttccaacaccgccccttcatccagtattccccggaagtctttcaccgtccc
ggagtctcctacccaaaccctaaccctaaccttaaccctaaccctaacgccggagcaaga
ctcatgcagctgctcggcaacgccgcccccgcccccgccccactcgaaaccgcgatctca
atgcccccaccatcctccatcgcgccggagtttgcctcgccgcctcccgctaccgcaccg
accctgcaagccgtcccgtccgctccgccggcgatcttggccggcatgcagccatcaccg
cctttgagggctccgagcagtaagatgccaaggggccggcatcttggcggggacaggaca
gtgtatgatgtggattcgaggcttccaggggagtcacagccgcctcaactcgaagtgaca
ccgatcactaagtatacgtcggaccccgggcttgtgcttggacgtcagatcgccgtgaac
cggacatacattgtgtacgggctcaagctcgggaacatccgggtgcttaacgtcaacaca
gcattgagatcacttctccgagggcacactcagagggtcacagacatggctttctttgcc
gaagatgttcatcttttagcaagtgcaagtgtagatgggagggttttcatatggaaaatt
gacgagggttctgatgatgaaaataagcctcaaattacgggaaaagttatagttgctatc
cagataataggagatggagaatcatatcatccacgaatctgttggcattctcacaaacaa
gagattttatttgttggaattgggaaccgtgtgctaaagattgacacgacaaaagtggga
agaggaaaagagtttactgcagaggaacctcttaaatgccccatggagaagctgctggat
ggagttcagctcattggtaagcatgacggcgatgtgacagagttgtctatatctcagtgg
atgacgactcgtctagcttcatcatcaaaagatggcacggtaaagatctgggaagaccgc
agggctgttccgcttgctacattgagaccacatgacggccaagctgttaattcagtctca
ttcctgacatcgcctcaacgccctgatcacattaatcttattacggcgggccctcttaac
cgagaaataaaactttgggcttctgagagtgaggaaggctggctattgccaagtgattct
gaatcatggtgctgtactcagaccttggatttgagaagttctttagaacctcggtttgag
gagggatttttcaaccaagttgttgttttacctcgtgcaagcttgataatacttgcaaat
gcaaaaaaaaatgctatttatgcagttcatgttgatttcggtccatatccagctttgaca
tgtatggactatatagcagattttattgttgcaatgcctattttaagtttgacaggaaca
aatgaatgcccacctgaaggggaacaggtggttaaattgtactgtgtacagacaatggcc
attcagcagtatatgctggacttatcacaatgtttacctacacaaactgaaaatgctgaa
ctggggagagaggcttctgttcctcgtgttattgatgtacctttttcggaagtagctgct
cacccttctatcagacctgctctctctgatctgcctgttggaagtgcttcaccaaaacca
tcacctacaagtagcattgcagagagtgcaggtgcaacctcatatcctttgacctcagtt
acttcagaggtcactagtggttgtgatttgtctacatcagatcttgaagttaaaccatcc
gcacctctgctttcatttgcagaggctgatgctatgcaggttacaacatcacctattgct
ttaaattttgacttttcagggagattgcctgccattgaaagtccttcagaaggttctgag
caagggccatcacttaggaatcatgatggcaaccattcagtttatggtggtgcagttgat
agaagtgaaactttgctttcagatgcacctgatgctccttccgtaaaggaaatctcagga
aaaggtgaacctaaagctggtcaaactgatacttcatttgtcccaaaatctcatttgatg
tttaagatggctggcaacgcaacacacctaataactccatctgaaatcttgtcaggtgct
atttcttcctccgaaagcacttttgttactcaaggcctgaaaagtgaggtaacaattcaa
gatatgattgataataacaactctgagagtgcagagatggaagtaaaaactgttactgag
agtagattaaatcaaaatatggaccttgacacagcgaaagtgcctcaagtagctctcgag
ggcagtactgagaaactattcaaaacttcagaatataatgtcgagatgatcaagggaggt
cctccactagctgactctgacaatatggaagagccacgctttatagatgacagtgcactg
cctcctggaactcatgatgaagttcaaaacagcgcaaaagatattgcaaagattgaagca
acttctgtttctacaacatcacagtccccatctactaaaggcaagcagcagaaaacaaag
acatctcaagtgtcagttccatcatccccctcattaaccccttttaactttactgattct
ccgactgaacttggaaataaagaaagttctccaactgatacagttcttccgcaaatttca
gcaatgcatgacatgctaaaccagcttgttgcaatgcaaaaggatttgcagaagcagatg
agtgggattgttgctgttccagttggcaaggaagggaaaagaatggaggcatccttagca
cgtagccttgacaaatctatcaaggctaatgctgatgctttatgggcccgctttcaagag
gagaatgcaaaacgtgagaggaatgagagggatcaaatgcagcagataactaatatgatt
gctagctctatgaacaaggatctgcctatgatgttagaaagggctttaaagaaggaactg
tcagcttctgggccagttgtagctcgggcaatcacaccagttattgataagaccatatct
tcagctatagcggacacatttcagaggggaattggagataaggcagtgaatcagttggat
aagtctgttaattcaaaacttgaggctacagtaatgaggcaaatccaagcacaattccaa
acttcaggcaagcaagctcttcaggatacattacgatcttgcttggaatcatcggttgtt
cctgcatttgagcaatcttgccgagttatgtttgagcaagttgatgctgcattccagaaa
ggcatgtctgaacatactgctgcttctctgcaacaacttgaggctgcacatactccacta
acacttactttaagagaagctatcaactctgcatcttcaatcacccacaatctcagcagt
gaactagttgatggccagcgcaaacttttagctcttgttgcatcaggaagcaccaaagct
ttaaatcctacagctatgcaggctaacaatggcccgatggcaggtctacctgagatggcc
ttgtctgttcagcaggttgaagcaccactggacccaacaaaggagctaaatagattgata
tctgagcggaaatatgaggaagcattcacaatggctcttcaaagaagtgacgtctctatg
gtctcttggttatgttctcaggtcgatttgcatgagatgttatacatggtaccgcttcca
ctaagtcaaggagttctgctctctcttcttcagcagctggcctgtgacattggcaatgag
acatcccgaaaggttgtatggatgacagatgtagctgtatcaattactccgacagatcag
atgatctctgtacatgtacacccaatatttgagcaagtctacaacatactggctcaccag
atgtcacaacccatacccaaaggacttgaaggtgccaatattcgggtattgatgcatgtt
ataaactcggtactgaggagttgtaaatga

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