Typha angustifolia (narrow-leaf cattail): 140773312
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Entry
140773312 CDS
T11061
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140773312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140773312
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140773312
Spliceosome [BR:
tang03041
]
Complex C
Other components
Step II factors
140773312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_1st
KH_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
Helicase_C
IBR
OB_NTP_bind
DEAD
zf-RING_UBOX
AAA_22
Rcat_RNF216
IBR_1
zf-C3HC4_2
zf-C3HC4
KH_Vigilin
WHD_HA2
AAA_19
zf-RING_2
Arc_MA
ABC_tran
zf-Nse
NAT10_TcmA_helicase
RPN7
AAA_30
AAA_29
Motif
Other DBs
NCBI-GeneID:
140773312
NCBI-ProteinID:
XP_072971894
LinkDB
All DBs
Position
13:join(1150992..1151792,1152321..1155471,1156577..1157790)
Genome browser
AA seq
1721 aa
AA seq
DB search
MRKGYSHYDRRPMRPFRPPDQRPLPNINLWQPRPKSKPSFVVLLLRPKSTTKPLSPSDIK
SLIASCPSPPEEYSIPSSGRLAAMLFFHRKSDAIDDFVFLWSRRLDGDHPMTPRLEPSDL
AEDGSRVRALFSRHVGRLLESDTVRQCEEMIHKVGVEIKKVSQLLQQRNRLVKFGELQDR
KNRLKMEREQMECKLEEFRAAMECLLARLRKERGEEDMEKVEIFNLGHDLDYGRIHGLMM
RECRRLEDGLPIYACRRKILNHIFSNQAIVLVGETGSGKSTQLVQFLADSGLTADGSIVC
TQPRKIAAMSLAERVGEEGNECYADDFVMSYPTYSSSQQFRSRIVFMTDHCLLQHCINGM
GLAGISCIVVDEAHERSLNTDLLLALIKKKLLESLDLRLIIMSATADASKLADYFYGCYT
FHVTGRTFPVEIKYIPSISEDPSFCTILKQISDNYTSYVCDVIRMVRIIHKIEEDGSILA
FLTSQAEVEWACENFTDPAAVVLPMHGKLSSIEQSRVFKNYPGKRKVIFSTNIAETSLTI
QGVKYVVDSGMVKESRFEPSTGMNILKVNWISQSSANQRAGRAGRTEAGKCYRLYSECDF
HSMERHQEPEIRKVHLGTAVLRILALGIRKTEDFEFVDAPSPKAIDMAMHNLVQLGAVTH
QDDEFELTNTGRSLVKLGVEPRLGKIILDCFSYGLRKEGLVLAAVMANASSIFCRVGSDE
DKYKADSLRVSFCHKDGDIFTLLSVYKKWEEEHDSRSKWCWQNSINAKSMKRCQETVMEL
ENCLKHELNIIIPSYWLWDPDEPTLHDKSLKRILLTSLADNLAMFSGCDRLGYQVALTGQ
NVQLHPSSSLLVYSNKPNWVVFREILSIPNQYLVCVTAVDYDDFYMIQPPLFDVQQLESQ
KMQMKVITGAGNSLLRRFCGKSNQNLRRILSHIKKVCMDDRIVVDIDFDHGEIQVFANAK
DVEKVSSTVSDALECEARLLRDECVEKSLFPGRPGSSPTIALFGSGAEIKHLELEKRYLT
VEIIHPNPHALDDKELIFMVDQRVSGIANVHKHVGTDREGADASKWGKITFLRPENAENA
VAMLNEEEYHGSILKVLPICTDDHRVLPFPAVRVKVSWPRRPSRGIALITCGKGEAEFIV
RDCSNLEIGGRYIKCEVSTKYENCVFVRGLSKNVSETELCDAFHHATNRRILDIHLLRGL
LGISDPSITTCREELVKEISAFMPNKKFPDQNFRVEVFKPEVRDYMMKASITFNGSLHLE
AAKALDHLQGRVLPGCLPWQTIQCQNVFHSSVSCPSRVYFVISQQLDSLLQYFQRQKGVS
YNLENNEYGSFRVKISANATKTIADLRRPLEQLMKGKTVRHPNLTSTMVQLHLSHDGVRH
LKDIEQETGTYILYDRQSLNFKVFGPPGQVSIAEEKLVQTLLFLHEKKLLEIRLRGRNLP
PDLMKEVVRRFGPDLHGLKEKVPEVEATLNTRRHILYVRGSKEQKQTVEQLISEVAISID
HTGLVEQTSEGSCPICLCELEEPYRLETCGHNFCRACLVDQCESAIRSHDGFPLCCVKDG
CKKLIFLVDLRSLLSSEKLEELFRASLGAFVASSGGTYRFCPTPDCPSVYRIASPDAEVG
PFVCGACTVETCTKCHLEYHPFISCERYKEYKEDPDQSLLEWRHGKENVKNCLSCGYTIE
KSDGCNHIECKCGTHICWVCLNIFRSSDECYTHLRSVHQSY
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagggatactcacactacgatcgccggccgatgaggcccttccggccgccggac
cagcggcccctcccaaacatcaacctatggcagccgaggcccaagtccaagccgtcgttt
gtcgtcctcctcctccgcccaaaatccacgacgaaacccctctccccttcagatatcaaa
tccctcatagcctcatgcccttccccgccggaggagtactcgataccctcctctggccgc
cttgccgccatgcttttcttccaccggaaatccgacgccatcgatgactttgtcttcctc
tggagccgccgcctcgacggagaccaccccatgactccgaggctcgagccatccgatctt
gcggaggacgggagccgcgtccgtgctctattctcccgccacgttggtcgccttcttgaa
tcggatacagtgcggcaatgtgaggagatgattcacaaggtgggggttgagatcaagaag
gtctcgcaattgctccaacaaaggaaccgactcgtgaaatttggggagctccaggatagg
aagaataggttaaaaatggagagagaacaaatggaatgcaagttggaggagttcagggct
gccatggagtgtcttcttgctagactccgtaaagagaggggggaggaggacatggaaaag
gttgaaatattcaaccttgggcatgacttagattatggcaggattcatggattgatgatg
agggagtgcagaaggcttgaggatggattgccaatttatgcttgtagaaggaaaattctg
aatcatattttctctaaccaggctattgtcttagtgggagagactggatctggaaagagt
acacagttggttcagtttcttgctgactcaggactaactgctgatgggtcaattgtatgt
actcagcctcgcaaaattgcagccatgtctttggccgaaagagttggggaagaaggtaat
gagtgctacgcagatgattttgtgatgtcttatcccacctattcatcttctcagcagttc
aggtcaaggatagtatttatgacagaccattgtctcctccaacattgcattaatggtatg
ggtttggctggcatttcgtgtatagttgtagatgaagcacatgaaagaagcttaaatact
gatcttcttctggcattgatcaagaagaagctgcttgaaagcttagatttgcgactgatt
ataatgtctgccacagctgacgcaagcaaacttgcagattacttttatggttgctatacc
tttcatgtaaccgggagaaccttccctgtggaaattaaatatattccaagtatttctgaa
gatccttctttttgtaccattctgaagcagatttctgataattatacttcatatgtttgt
gatgtcataagaatggtgaggataattcacaagatagaggaggatggttctatacttgca
tttttgacttctcaagcagaagttgagtgggcttgtgaaaatttcaccgaccctgctgca
gtggttctgccaatgcatggaaagctttcttctatagaacaaagtcgtgttttcaaaaac
tatccagggaaaagaaaagttattttctccactaatatagcagagacttcgttgaccatt
caaggagtgaaatatgtagttgactctggcatggtcaaagaaagcaggtttgaacctagc
actggcatgaacatcctgaaggttaactggatttctcaaagttctgctaatcaacgagct
ggacgagctggccgaacagaagcaggaaaatgttacagactatactctgaatgtgatttt
cattcaatggaaaggcatcaggagcctgaaatccgcaaagttcatcttggaactgctgtt
ttgagaatccttgctttgggtattaggaaaacagaagactttgagttcgtagatgctcca
agtccaaaggcaattgacatggctatgcataatcttgtccagttaggcgctgttactcat
caagatgatgaatttgaactaactaatactggtcgatctttagttaaattgggtgttgaa
ccgcggctcggcaaaatcattcttgattgtttcagttatggattgcgaaaagagggtcta
gttcttgctgctgttatggcaaatgctagcagcatattttgtagagttggtagtgatgag
gacaaatataaagctgactccctcagggtctcattctgccacaaggatggggatatattc
actttgctctctgtttacaagaaatgggaggaggagcatgatagtagaagtaagtggtgt
tggcagaatagcattaatgctaagtccatgaagaggtgtcaagagactgtaatggagctt
gaaaattgtcttaaacatgaactcaacattatcattccgagttattggttatgggatcca
gatgaaccgactttgcatgataagtcactaaagaggattttactcacatctcttgcagat
aatcttgctatgttttctggatgtgatagacttggttatcaagtggcattgacaggccag
aatgtccaacttcatccttcaagctcattgcttgtgtatagcaacaagccaaattgggta
gtatttagggaaatcttgtcaataccaaatcaatatttggtatgtgtaactgcagttgat
tatgatgacttctatatgatccaacctcctttgtttgatgttcaacagctggagagccaa
aagatgcagatgaaggtgattactggggcgggcaatagcttgcttcgaagattttgcggc
aagtcaaaccaaaatctaaggagaatcctttcacatatcaaaaaagtttgcatggatgac
cgtattgttgttgatattgactttgaccatggcgagattcaggtatttgctaatgcaaaa
gatgtggaaaaggtgtcttcaactgttagtgatgccttggaatgtgaagcaagattgtta
agagatgagtgtgttgagaaaagcttatttcctggcagacctggtagctctcccaccatt
gctttgtttggttctggagctgaaattaagcatctagagcttgaaaaacgttatttaaca
gtggagataatccatccaaatcctcatgctcttgatgataaggaactaattttcatggtg
gaccagcgtgtgtctggtatagctaatgttcataaacatgtagggactgaccgggaggga
gcagatgcgagtaagtggggcaagattacatttcttagacctgaaaatgcagaaaatgct
gtcgccatgctgaatgaggaagaatatcatggttccattctgaaagtgctccctatctgt
accgatgatcatcgagtgttaccatttcctgcggtaagagtcaaagtttcttggccacga
agacctagcaggggaattgcacttattacatgtggcaaaggggaagcagaatttattgtt
agggactgctccaatttggaaattgggggccggtatataaaatgtgaagtcagcacgaag
tatgaaaactgtgtctttgtaagaggcctttcgaagaatgtatctgagactgaattgtgt
gatgcatttcatcatgcaacaaataggagaatccttgacattcacttgttgaggggattg
ctgggcatcagtgacccctcgattacaacttgcagagaagaacttgtcaaagaaatttct
gcttttatgcctaacaaaaagtttcctgaccaaaatttccgtgttgaggtgttcaaacct
gaagtgagggattatatgatgaaagcttcaatcacttttaacggcagtctgcatctcgag
gccgcgaaagctttggatcacctccaagggagagtgctccctggttgtctcccgtggcag
actatacaatgccagaatgtgttccacagttctgtatcctgtccgtcccgtgtctacttt
gttatcagtcagcaacttgattctctgcttcaatattttcaacgccaaaagggagtctcc
tataatctggaaaacaatgaatatggctcttttcgagtaaaaatttctgccaatgccaca
aaaactatagcagatttgaggaggcctctcgaacagctaatgaaaggcaagactgtaaga
catcccaatcttacctcaacaatggtgcagctacacttgtcccatgatggtgttagacat
ttgaaagatattgaacaagagactggaacctacatcctctatgacaggcaaagccttaat
tttaaagtctttggccccccggggcaggtgtctatagctgaggagaaattggtccagaca
cttctattccttcatgagaagaagctactcgagattcgtctccggggtcgcaacctccca
ccagacttgatgaaagaggtagttagaaggttcggaccagatcttcatggtttgaaggag
aaggtgcctgaagttgaggctactctaaatactcgacgccatatcctttatgttcgagga
agcaaggagcagaagcaaacagtggaacagttaatctcagaagttgcaatatccattgat
catactgggttggttgaacagacatcagagggctcatgccctatttgcttgtgtgagcta
gaagaaccttacaggctcgaaacctgtgggcataatttctgtcgggcctgcctggtggat
caatgtgaatctgccatcagatcacatgatggtttcccgctttgctgtgttaaggatgga
tgcaagaagctcatcttccttgttgatctgaggtctctgttatcgagtgagaagctagaa
gaacttttcagagcttctttaggtgcatttgttgcatcaagtggcggaacctacaggttc
tgcccgacccctgactgcccgtctgtgtatcggatagcttcaccggatgccgaggttgga
ccatttgtttgtggggcttgcactgtggagacatgcaccaagtgccatctggagtaccac
ccattcatatcctgtgaaagatacaaggagtacaaggaagatccagaccaatctctactt
gaatggcgccacggaaaggagaatgtaaagaattgcctttcttgtggctatacaattgag
aagagcgatggctgcaaccacattgagtgcaagtgtgggacacacatctgctgggtgtgc
ttgaacattttcagaagcagcgatgagtgttacactcacctcaggtctgtgcaccagtcc
tactga
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integrated database retrieval system
