Typha angustifolia (narrow-leaf cattail): 140773449
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Entry
140773449 CDS
T11061
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140773449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140773449
03036 Chromosome and associated proteins [BR:
tang03036
]
140773449
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140773449
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
140773449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
140773449
NCBI-ProteinID:
XP_072972111
LinkDB
All DBs
Position
13:join(918131..920593,920794..920917,922323..922468,922620..922717,923434..923626)
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AA seq
1007 aa
AA seq
DB search
MNMGAEVYLPILCSSEYFTEPSLDELAVREAADPDYCSRVPDFVVGRVGYGKIRFYGKTD
VRWMKLDEIVKFDRHSVTVYENEDEKPPLGDGLNKAAEVTLVLLLESLDSQGSKSNNLVD
KLRSSTTRQGAHFLSFDSCTGEWKFLVDHFSRFGLGEDEEEDVPMDDVQPISEAKEPQVN
GYGVDLSHSLPAHLGLDTSKMQEMRLLMFPVEDEDEDLDGSIPTDRRYLTREHMKIDSPS
SSAKVSMLKSPLQGSSHKTNNKINPSISRKAPQPLLEYNVGSSDLSPSRIILMTGQNKGF
QVRTTKIEGFKLEAKHATPIAGKYSNCIVDAALFMGRSFRVGWGPNGILVHTGSPVCNPG
SGLSSIVNIEKVAIDKAVRDEKNKVKDDLVDLSFTSPLNIHKSLDHEVLEIEFGSFKLKL
QKVVTNRLMLPELCRAYIGIIERQLEVSDLSTASRILLMHQVTVWELIKVLFQERETNEQ
LNLTCDEEDEEDMILDKKDSSVDIDHEANPLARRAEFSYWLQECVFHRVQGEVSCLSNAS
YLEHILLLLTGRQLDAAVELAASRGDVRLAILLSQAGGSTINRSDMAQQLDLWRINGLNL
NFIENERLKLYEMLAGNIQGALQDSSIDWKRFLGLLMWYQLPPDTSLSVIIHTYQHLLSE
GRAPHPVPVYIDEGPLDEAPEWTAGDRYDISYYLMLLHANEGETFGLLKTMFSAFASSHD
PLDYHMVWHQRSVLEAIGAFGTNDLHVLDMSLVHQLLCLGQCHWAIYVIVHMQYHEDFPY
LQVHLIKEILLQYCESWNKEETQRQFIEELGIPKEWMHEALAIYFEYYGDRINALEHFIQ
CGNWQKAHSIFIISVAHSLFLSSEHSEIWRIASSMEEYKSEIAEWDLGGGIYIDFYIVKN
SLQEENILSDLDPLEKKNEACRNFISRLNDSLLVWGNRLPVEARATFSKMAEELCSILAS
APGKNSAPDVQMNCFETMLSAPVPEDLRSSHLQDALSVFTYLLTEAA
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgggagcagaagtgtatttacccattttgtgttcatctgaatattttactgaa
ccttcacttgatgagctagctgtcagagaggctgctgatcccgattactgtagtagagtt
ccagactttgttgttggaagagtcggttatgggaaaattagattttatgggaaaactgat
gttagatggatgaaattggatgagattgtgaagtttgatcgtcattctgtaacagtttat
gagaatgaggatgaaaaaccccctctaggcgatggtctcaacaaagctgctgaagtaaca
ctagtcttgttactagaatcattggattcacaaggttcaaagtctaacaatctggtagac
aagttaaggagcagcaccaccagacaaggagctcactttctttcatttgattcatgtact
ggtgaatggaagttcttggtggaccattttagtcgatttggattgggtgaggatgaggaa
gaagatgttccaatggatgatgttcagccaatttcagaagcaaaggagccccaagtaaat
ggatatggagttgatttatctcattcacttccggctcacctagggctggatacatcgaaa
atgcaggaaatgaggctattgatgtttccagttgaggatgaagacgaagatctcgatgga
agcattccaactgataggagataccttaccagagaacatatgaagattgattcacctagt
tctagtgcaaaagtctccatgcttaaatctcctttacagggttcctctcacaaaactaac
aataagattaatccttccatttcaagaaaagcacctcaaccattacttgagtacaacgta
ggtagctcagatctcagcccgtcaaggatcattctcatgacagggcaaaataaggggttt
caagtaaggactacaaaaatagaagggtttaaacttgaggcaaagcatgcaactcctatt
gctggtaaatattctaactgcatagttgatgctgccttatttatgggcagatccttccga
gttggatggggacctaatggcattcttgttcatactggcagtccagtttgtaacccagga
agtggtctatcgtctattgttaatatagaaaaggttgccatagacaaagctgtccgggat
gaaaagaataaagttaaggatgatcttgttgatttgagttttacgtcaccattgaatatt
cacaagtctcttgaccatgaagtactcgaaattgaatttggatctttcaaactaaagctt
cagaaggtcgtaaccaatcgtttaatgctaccagagctttgccgagcttatattggtata
attgaaagacagcttgaggttagtgatttatctacagcttctcgcatactcctgatgcat
caggtcacagtttgggaactgataaaggttttattccaagagagggagacaaatgagcaa
ttaaatctcacatgtgatgaagaggatgaggaggatatgatattagataagaaggatagc
tctgttgacattgaccatgaggcaaacccgttggctcgcagagcagagttcagttattgg
ttgcaggagtgcgtcttccatcgtgtacagggggaagtaagttgcctaagcaatgcaagc
tacttggaacacatacttttacttcttactggacggcaactagatgcggcagtagaactg
gctgcttcaagaggagatgtccggcttgcaatcttactaagtcaggctggtggatcaaca
attaatcgttctgacatggcacaacaattggatctttggagaataaatggattgaactta
aatttcattgaaaatgagaggttaaaattgtatgagatgctggctggtaatattcaaggt
gctctccaagattcatcaattgattggaaaagattcttgggtttactaatgtggtaccaa
ctgccacctgacacttcactctctgttattattcatacctatcaacaccttctcagtgaa
ggaagagctccacatcctgtcccagtttatatagatgaaggaccacttgatgaagcgccg
gagtggactgcaggtgatcgttatgacatatcatattatctaatgcttctccatgctaat
gagggggagacatttggtttattaaaaactatgttcagtgcctttgcttcatcgcatgat
ccacttgattaccatatggtttggcaccaacgatctgttttggaagctattggtgctttt
ggtacaaatgatcttcacgttctggacatgagccttgttcatcaattactgtgtctgggg
caatgccactgggctatctatgtcatagtccatatgcaatatcatgaagattttccttac
ctccaagtgcatcttataaaagaaatattgctgcaatactgtgaatcatggaataaggaa
gaaacacagagacaatttattgaggaacttggcatacctaaggaatggatgcatgaggct
ctggcaatatattttgaatactatggagatcgtataaatgcacttgagcatttcattcaa
tgtggcaattggcagaaggcgcactcaatttttataatatcagtagcccattctttattt
ttgtcatcggaacattcagagatctggaggattgctagctccatggaagagtacaagtca
gaaattgctgaatgggaccttggtggtgggatctatattgatttttatattgtgaaaaat
tctttgcaagaagaaaatattttgagtgacttggacccacttgagaagaaaaatgaagca
tgcagaaatttcatcagtcgcttgaatgattcactattagtctgggggaatcgattacct
gttgaagcaagggcaaccttctcgaagatggcagaggagctatgtagtatacttgcatcc
gccccagggaagaattccgcaccagatgttcaaatgaactgctttgagacgatgctcagt
gctccagtccctgaagacctgcgatcttctcatctgcaggatgccctctcagttttcact
tacctactcactgaagcagcatga
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integrated database retrieval system
