Typha angustifolia (narrow-leaf cattail): 140773733
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Entry
140773733 CDS
T11061
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140773733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140773733
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140773733
Spliceosome [BR:
tang03041
]
Complex C
Other components
Step II factors
140773733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_22
RRM_1
Rcat_RNF216
ResIII
IBR_1
HA2_C
zf-RING_UBOX
zf-C3HC4_2
AAA_19
ABC_tran
zf-C3HC4
nSTAND_NTPase5
WHD_HA2
zf-RING_2
NAT10_TcmA_helicase
nSTAND3
AAA_30
T2SSE
RRM_7
CENPU
AAA_29
Seryl_tRNA_N
Motif
Other DBs
NCBI-GeneID:
140773733
NCBI-ProteinID:
XP_072972544
LinkDB
All DBs
Position
13:complement(join(2077022..2078247,2078768..2081915,2088534..2089334))
Genome browser
AA seq
1724 aa
AA seq
DB search
MKGSYPRPYYPYSPLPRPPPTPAASEPSLPFFELRLCRAAGRRGPAPDYLDSLVSTLPFS
PAEFFVYPAGPLAAKLFFRRAAEALAGVEFLWRRRLDGAHLLNPRVVSPSFSRHDRAEEA
ERVLVLFADHARGLLKGKALEKCAKRMEEVGAEIAAVRKSLRQRNSWKRYNELRAKRRQL
ETEEEQLKAKMEEFLAAIRCVLAHLGEREVDNGQGKVEGDLELFKFGDEWDWSRIHSVLL
RECRRLEEGLPIYACRRNILRAISENQVIVLVGETGSGKSTQLVQFLADSGLATKGSIVC
TQPRKIAATSLAQRVAEESNGCYEDYFVISYPNNFSSQGFGSKVIFMTDHCLLQHYMNEK
SLDDISYIIIDEAHERRLNTDLLLALLKRTLLQHFDLRLVIMSATADARKISDYFHGCST
FYVTGRNFPVEIKYIPDISAEASYAPFLKNFSGTCASYVCDVVKMVSVIHTTEQDGGILA
FLTSQMEVEWACEKFTDPLAVVLPMHGKLSCEEQNRVFQNYPGKRKVIFSTNVAETSLTI
QGVKYVVDSGMVKESKFDSISGMNMLKVCRTSKSSVNQRSGRAGRTEPGKCYRMYSLHDF
QSMQMHQEPEIRKVHLGIACLKILALGIKNVKEFDFIDAPSPCAIDTAMQNLTRLGAIIH
ENGIPELTETGRCLVKLGIEPRLGKILLECFDYGLKKEGVVLAAVMANSSSIFCRVGNDE
EKCKADCLRLPFCHRDGDLFTLLSVYKEWECGHESRNQWCWQNSINAKSMRRCWDTICEL
EMCLQYELNIIIPNYWLWNPHEPTEYDRSLKKVILSSLADNAAMYSGSDRLGYRVALTGE
YLPLHPSCSLLVYSKRPSWVIFGEILLLSRQYLVCVTAVDTECLYRLQPPLFDISQLENE
KLQMNVISGVGNNLIRRLCGRSNHNLHCLVSQIQQVCMDNNISVDADFDKREIHLLAKEK
DMEKVCFIVNDALRCEAHWLRDECIEKCVYHGGLGSSPSVALFGSGAEIKHLELEKRYLT
VEILHPKANELNDKELLKIADKCGNGIASFYRHLGNGQEGLESNKWGKVTFLSPEAAENA
VVKLNEVELQGSLLKVLPVRPWNPKVSQFPAIRAKVCWPRRPSKGVALITCSQGDAEFIV
QDCYSLIIGDRYVNCQPSVKHTNRVFVSGIPKDVTEQEIYDAFLSATNRRIFGVCLLRGE
AINNLPTSTYAEALSKEVAPFMLNRSLASCNFQVEVLNYETKDYMMRATITFDGSLHMEA
TNALDHIQGKVLPCCLPWQKIQCQRIFSSSVSCPARVYIVIKDQLNHLLEGFKHRKGVSY
RRDKNENGTFRITLTADSPKAIADARKPLEGLMKGKIISHRSLSPAVLQLLSSQEGFTLM
KDVERSTKTYILCDRHNQLSVKIFGPQERLAAAEEKLTQKLLSFHENRPLDIRLRGRNLP
HNLMKEVAQRFGPDLHGLREKVPGINMLLRTRTHILSVRGTKEMKQSVQEVICELALSLG
SSDLASKPSDDEGTCAICLCELDEPHRLEECGHSFCRNCLIDHCESAIRSREGFPLCCSK
DKCQKPLLLVDLRALLSTDKLEDLFRASLVSFVASSGGAYRFCPTPDCPSVYAVSMQHEA
AKAFFCGACGAETCTKCHLELHPFVTCELYRQFKDDPDLSLQEWRKGKAHVKDCPSCGHT
IEKVEGCNHIECRCGRHVCWVCLESFNCSDECYGHLRSVHHSIV
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgaagggttcctatccgagaccttactacccctactcccctctccctcgccctcctcct
actccggcggcctcggagccatcgctcccgttttttgagctccgcctctgccgagccgcc
ggccggcgaggccccgcaccggactacctcgactccttagtctccactctccccttttcc
ccagccgagttcttcgtctaccccgccggccccctcgccgccaagctcttcttccgccgc
gccgccgaagccctcgcaggcgtcgaattcctctggcgccgtcgcctggacggcgcccac
ctcttgaaccctagagtcgtctccccgtccttttcccgccacgatcgcgccgaggaggcg
gaaagagttctcgtcctcttcgccgaccacgcccgtggtctccttaaaggcaaggcattg
gagaagtgcgctaaaagaatggaggaggtcggggcggaaattgcggcggttaggaagtcg
ctccggcagcggaattcctggaaacgctacaatgagttgcgtgcgaagcggcggcagctt
gagaccgaggaggagcagttgaaggctaagatggaggaattcctggcagcgattaggtgt
gtgctcgcgcatctcggagaacgagaggttgataatggacagggaaaggtggagggtgat
ctggagttgtttaaatttggggatgaatgggattggtccaggattcactccgtgctgctg
cgggagtgtcggaggctcgaagagggtcttcctatttatgcatgcaggaggaatattcta
agggccatatccgagaatcaggtaattgtcttggttggggagacaggttctgggaaaagt
acacaattagtccagtttcttgctgattcgggactagctaccaaaggatctatagtgtgt
actcaaccgcggaaaattgctgctacatctttagcacaaagggttgcagaggaaagtaat
ggctgctatgaagactattttgtgatttcttatcccaacaatttctcatcgcaaggtttt
ggttcgaaagtaatatttatgactgaccactgccttctgcaacactacatgaatgagaag
tctctggatgatatttcatatattattattgatgaggcgcatgaaagaagattaaacact
gatttgttactggcattacttaaaagaacacttctgcagcattttgatttaaggcttgta
attatgtctgcaacagctgatgcaagaaagatttcagactatttccatggttgcagtacc
ttttatgtaaccggaagaaattttcctgttgaaatcaaatatattcctgatatctctgct
gaggcttcttatgctccatttctgaaaaacttttctggtacttgtgcctcatatgtttgt
gatgtggttaaaatggtgagtgtaatccacacaacagagcaggatggtggtattcttgca
ttcttgacttcacagatggaagtagaatgggcttgtgagaagtttactgatcctttggct
gttgttctgccaatgcatggaaaactttcttgtgaagaacagaatcgtgttttccagaac
tacccagggaaaaggaaggttatattttccacaaatgttgcagaaacgtccctcactatt
caaggtgtaaagtatgtggttgactctggaatggttaaagagagtaagtttgattctatt
agtgggatgaatatgcttaaagtgtgtcgtactagtaaaagttctgtcaatcagcgttct
ggacgagcaggtcggacagaaccaggcaagtgctacaggatgtactctttgcacgacttt
caatcaatgcaaatgcatcaagaacctgaaattcggaaagttcaccttggtattgcctgc
ttgaaaattcttgctttaggcataaagaatgtgaaagaatttgattttattgatgcacca
agtccatgtgccattgacacagcaatgcagaatttgactcgattaggtgccatcatccac
gaaaatggcatacctgaattaactgaaactggccggtgcttggttaaattaggtattgaa
ccacggcttgggaagattctccttgaatgctttgattatggtttgaaaaaagaaggtgtg
gttcttgctgctgtaatggcaaattctagcagcatcttttgtcgcgttggcaatgacgag
gagaaatgtaaagcagactgccttagattgccattctgtcatcgtgatggagacctgttt
acattgctttctgtttacaaggaatgggagtgtggacatgaaagtcgaaaccagtggtgt
tggcaaaatagcatcaatgcaaaatcaatgagaagatgttgggataccatatgtgagctg
gaaatgtgtcttcaatatgaactcaacattatcattccaaactattggttatggaaccca
cacgaacctactgaatatgacaggtcactaaagaaggttatactttcatcacttgcagat
aatgcagctatgtattctggatctgatcggcttggttaccgagtggctttaacaggagaa
tatctgcctcttcatccttcatgctcactgctagtatatagcaagaggccaagttgggtc
atctttggtgaaatattgttactatcaagacagtatttagtttgtgtgactgctgttgac
actgagtgcctgtataggcttcagccgcctttatttgatatttcgcagttggagaacgag
aagttgcagatgaatgtgatttctggagttggcaataatctcattagaaggttatgtggc
agatcaaatcataacctgcattgccttgtttctcagattcagcaagtttgcatggataac
aatatcagtgttgatgctgactttgataaaagagagattcacttgttggcgaaagaaaaa
gacatggaaaaggtttgcttcattgttaacgatgccttgaggtgtgaagcacactggttg
agggatgaatgcattgagaaatgtgtgtatcatggagggcttggtagttctccctctgtt
gcactgtttggctcgggtgctgaaatcaaacatctagagcttgagaagagatacctgact
gtggaaatactccatccaaaggcaaatgaactgaatgataaggaacttctaaaaattgct
gataaatgtggcaatggaatagctagcttttataggcatctgggaaatggacaagagggt
ttggaatcaaataagtggggcaaagtaacatttcttagccctgaagctgcggaaaatgct
gtagtcaagctgaatgaggtggaactacagggctccttgttgaaagtgttgcctgtgaga
ccatggaatccaaaagtctcacaattccctgcaataagagccaaagtttgttggccacgt
agaccaagcaagggagttgcgctcatcacgtgttctcagggtgatgctgagtttatagtt
caggactgctattcgttaatcattggagataggtatgttaattgtcagcccagtgtgaag
cacacaaatagagtgtttgtgtcaggaattccaaaagatgtcacagaacaagaaatatat
gatgcttttctgagtgcaacaaataggagaatttttggtgtttgtttgctgagaggagaa
gccatcaataacttgccaacttccacctatgctgaagcactatctaaagaagttgctcct
ttcatgcttaatagaagtctggcaagctgcaattttcaagtagaagtgttgaattatgaa
actaaagactacatgatgagggctacgatcacttttgatggaagtctacatatggaggca
acaaatgcattggatcacatccaaggaaaagtactcccttgttgtcttccctggcaaaaa
atacagtgccaacgtattttttccagctctgtttcttgtccagctcgtgtctacattgtc
ataaaggaccaactcaatcatctacttgaaggttttaaacatcggaagggtgtgtcctat
agacgtgataagaatgagaatggcaccttccgtattactctcactgcagatagcccaaag
gctattgctgatgcgaggaagcctcttgaagggctgatgaaagggaagatcataagccac
cgaagcctcagccctgccgtgctccaattgctctcctcccaggaaggtttcacgcttatg
aaagatgtggagaggtccactaagacgtacattctctgcgacagacacaaccagctgagc
gttaaaatatttggtccccaggaaagattagctgcagctgaggagaagctaacccaaaaa
ttgctatccttccatgaaaacaggccgttggatatccgcctccgaggccgcaatctccct
cataatctaatgaaagaggtggctcaaaggttcggcccagaccttcacggcctgagagag
aaagtccccggcatcaacatgcttctcaggacccgaacccacattctctccgtccgaggg
accaaggagatgaaacaaagtgtacaagaggttatatgcgagctagcactctccctcggc
agctcagatttggccagcaagccatccgacgatgaaggcacatgcgccatttgcctatgt
gagcttgacgagcctcaccggcttgaagagtgcggccacagcttctgccgtaactgtttg
atcgaccactgcgaatctgccataagatcccgcgaaggattccctctgtgctgcagcaag
gacaagtgccaaaagccgctgctgcttgtggacttgcgagctctcttatcgaccgacaag
ctagaggacttgttcagggcgtcattggtttccttcgttgcgtccagcggcggcgcctac
cggttctgtccgacccctgactgcccgtcggtctacgcggtctccatgcaacatgaggcg
gcgaaggcattcttctgtggtgcctgcggtgcggagacatgcaccaagtgccatctggag
ttgcacccattcgttacctgcgagctatacaggcagttcaaagatgacccagacctgtcc
ctgcaggagtggcgcaaggggaaggcgcatgtcaaggactgcccttcctgcggccacact
attgagaaggtagaaggttgcaaccacatcgaatgccggtgcgggagacacgtctgctgg
gtctgcttggagtcgtttaactgcagcgatgaatgctatggccacctcaggtcagtgcac
cattccattgtatag
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integrated database retrieval system
