KEGG   Typha angustifolia (narrow-leaf cattail): 140773764
Entry
140773764         CDS       T11061                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    140773764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tang03019]
    140773764
   03041 Spliceosome [BR:tang03041]
    140773764
   03009 Ribosome biogenesis [BR:tang03009]
    140773764
   03016 Transfer RNA biogenesis [BR:tang03016]
    140773764
Enzymes [BR:tang01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     140773764
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     140773764
Spliceosome [BR:tang03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    140773764
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    140773764
Ribosome biogenesis [BR:tang03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    140773764
Transfer RNA biogenesis [BR:tang03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    140773764
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk Helicase_C DEXQc_Suv3 ResIII ArAE_1_C nSTAND3 ATPase_2
Other DBs
NCBI-GeneID: 140773764
NCBI-ProteinID: XP_072972586
LinkDB
Position
13:complement(join(6047187..6047297,6049081..6049173,6050242..6050337,6050430..6050578,6050665..6050818,6050901..6050996,6051086..6051175,6051388..6051546,6051678..6051902,6052286..6052402,6052472..6052543,6052629..6052796,6055303..6055371,6055569..6055673,6055908..6056222,6057186..6058175))
AA seq 1002 aa
MDEKVNPAKRKLAEKDSESKPVISSGMLESESVLKRRNLSRTCIHEVAVPNGYTSSKEEA
IHGTLSNPVFNGEMAKTYPFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMS
FKEKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYR
GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICY
LHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENEQFKEENFIKLQDTFTKQKSHTD
GNRFGGAKSSGRIAKGGSASAGSDIYKIVKMIMERKFQPVIIFSFSRRECEQHAMSMAKL
DFNSQEEKDIVEQVFRSAVLCLNEDDRTLPAIELMLPLLQRGIAVHHSGLLPIIKELVEL
LFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSGRAGRRGK
DERGICVIMIDEKMEMNILKDMVLGRPAPLVSTFRLSYYSILNLMSRAEGQFTAEYVIRN
SFHQFQFEKALPCMGEKISKLEQEAASLDSSGEAELAEYHKLALDIAHLEKRIMSEMIRP
ERVLLYLVPGRLVKVRDGGTDWGWGVVVNVVKKPPAALGAVPSSLAASRSSNYIVDTLLH
CSLVLSENGSRPKPCPPRPGEKGEMHVVPVPLPLLCGLSSIRIAIPSDLRPAEARQTVLL
AVQELEKRYPQGLPKLHPLKDMGIEEPEFVDLVRQVEELEQKFCAHPQHKSGQSEQQLKW
YQRKAELSHEIQQLKTKMRDSQLQKFRDELKNRSRVLKMLGHIDADSVVQLKGRAACFID
TGDELLVTELMFNGTFNDLDHHQVAALASCFIPCDKSNEQIHLRTELAKPLQQLQDAARK
IAEVQRQCKLDINVDEYVESTIRPYLMDVIYCWSKGASFAEVIEMTDIFEGSIIRLARRL
DEFLNQLRSAAEAVGEVDLEKKFEEASGSLRRGIMFANSLYL
NT seq 3009 nt   +upstreamnt  +downstreamnt
atggatgaaaaggtaaatccagcgaagaggaagttagcggagaaagattcagagagcaaa
ccagtaatctctagtgggatgttggaatctgaatctgttctcaaacgtaggaatctttct
cgcacatgcatccatgaagttgctgtcccgaacggatatacttcctccaaggaggaggcc
atccatggaactctttctaaccctgtctttaatggtgagatggctaagacctaccctttt
gagttggatccattccagcgtgtttctgtggcctgtctggagagaaatgagtctgtcttg
gtgtctgcacacacttcagcgggtaaaactgctgttgctgaatatgccatcgcgatgtcc
ttcaaagagaagcagcgagtcatctatacctctcctttaaaggccctgagcaatcagaaa
tatagggaactaagtcaggagttttctgatgtgggactgatgactggtgatgtcaccctg
tcacccaatgccagttgcttggtgatgaccacagaaattttaagagggatgctatatagg
ggttctgaggtgttaaaggaagttgcatgggttatatttgatgagattcactacatgaaa
gatcgtgagagaggagttgtatgggaagaaagtataatattcttgcctccggcaattaag
atggtctttctttctgctactatgtcgaatgctactgagtttgccgaatggatctgttat
ttgcacaaacagccttgtcatgtggtatacactgacttcagacctacaccactacaacac
tatgtcttccctattggtggatctggtttataccttgtagttgatgagaatgaacagttt
aaagaggagaattttatcaaactgcaagatacattcaccaagcaaaagagccacacagat
gggaataggtttggtggtgctaaatctagtggtcggattgcaaagggtggatctgcttct
gcaggctcggacatctacaaaattgtcaagatgattatggagcggaaatttcaaccagtg
ataattttcagctttagcagaagggaatgtgagcaacatgctatgtcaatggcaaaactt
gattttaattcacaggaggagaaagatattgttgaacaggttttccgtagtgccgttctc
tgcttgaacgaagacgataggactttacctgcgatagagttaatgttgccacttcttcag
cgaggcattgcagtgcaccattctggacttcttccaataatcaaggaattggtggagctt
ctcttccaggaaggccttgtaaaagccctctttgctactgaaacttttgctatgggatta
aatatgcctgccaagacagttgttttcacatctgttaagaaatgggatggtgataccaat
cgctatatcggatctggagaatatatccagatgagtggaagagcaggtcggcgtggcaaa
gatgagcgtggcatttgtgttataatgattgatgaaaagatggaaatgaatattctcaag
gatatggttttaggtaggcctgctcctttagtgagtacttttagactaagttactactct
atcttgaatttaatgagccgagccgagggtcaatttactgctgagtacgtcatcagaaat
tcattccaccaatttcagtttgagaaggcattgccttgtatgggagaaaaaatttcaaag
ttggagcaagaagctgcttcccttgattcttctggcgaggctgaacttgctgaatatcac
aaactggcgcttgatatagctcaccttgaaaagcgtatcatgtctgagatgataaggcca
gagcgagttttgctatacttggtacctggtaggctggttaaagtacgagatggtggaact
gactggggatggggagttgttgtaaatgttgttaaaaagccccctgcagcattgggtgct
gtgccctcttctctggcagcttctcgcagtagcaattacatcgtggacacgctgcttcat
tgttctcttgttttaagtgagaacggttcacgtccgaagccatgcccacctcgtccagga
gagaagggcgaaatgcatgtggtccctgtgccattgcctctactctgtgggcttagcagc
atcagaattgcaatcccttctgatcttcgaccagcagaagctagacaaacggtacttctt
gcagtgcaagagctagaaaagcgttatccccaaggacttccaaagcttcacccattgaaa
gatatgggcattgaagaaccagaatttgttgacttagttcgtcaagtcgaagaacttgag
cagaaattttgtgctcatccacagcataagtctggtcaaagtgagcagcaattgaagtgg
taccagagaaaagctgagttgagtcatgaaatccagcaattgaagacaaaaatgcgggac
tcacagttacaaaaatttcgcgatgaactaaaaaatcgttcacgagttctaaagatgctt
ggtcatattgatgccgatagtgttgtccaattaaaaggacgagctgcctgctttatagac
acaggggatgaactgcttgtcactgagctgatgtttaatggtacatttaatgatcttgat
catcatcaagttgctgctcttgctagctgttttattccttgtgataaatcaaatgagcaa
atacacttgagaactgagcttgcaaaacctctgcaacaacttcaggatgctgctagaaaa
attgcagaggtgcaacgtcaatgtaagctggacattaatgtggacgaatatgtggagtca
actattaggccctacttaatggatgtaatatattgttggtcaaagggggcatcatttgct
gaggtaattgaaatgacagatatttttgaagggagcattatacgtcttgcaagacgatta
gatgaatttttgaatcagctgcgatctgctgcggaggctgttggagaggttgatcttgag
aagaaatttgaggaggctagtggaagtctccgacgaggaataatgtttgccaactctttg
tacttgtga

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