Typha angustifolia (narrow-leaf cattail): 140773891
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Entry
140773891 CDS
T11061
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
140773891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140773891
03036 Chromosome and associated proteins [BR:
tang03036
]
140773891
Transcription machinery [BR:
tang03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
140773891
Chromosome and associated proteins [BR:
tang03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
140773891
PBAF complex
140773891
GBAF(ncBAF) complex
140773891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Myb_DNA-bind_7
TM1266-like
Motif
Other DBs
NCBI-GeneID:
140773891
NCBI-ProteinID:
XP_072972770
LinkDB
All DBs
Position
13:join(13555274..13555751,13556179..13556708,13557843..13558532,13558609..13558775,13558871..13559448,13561342..13561541,13561683..13561949)
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AA seq
969 aa
AA seq
DB search
MEAKPREASVPLAVGPSARPPPPTETLPEPPRRRGGAAKRKAASAGLSSTSSPSSLAPSS
KRLAKERNPIQYHLPPIHNGPCTRARQSPNKFAVAALQKPPGTGLSPFSAADGGGNGTAV
VGDPAGGGEEEMAEEPLVDAEFEAVRSRGVNVHVIPTFAGWFSWKEIHQIEKQSLDSFFN
GKSEKRTPEIYLELRNSIMKKFHADPKVQVELKDLAELSVGDTDARQEVMEFLDHWGLIN
FHPFPPSEHDKSKSGTDGGDKTPSLLDKLYQFEIVQSYIHSVPKRAEPSITSTMPCFLRE
SALSDDLVTLVEPSVEYHCNSCSADCSRKRYHCQKQADFDLCSDCYNEGKFGTGMATADF
ILMEPAEAAGASGASWTDQETLLLLEALELFGANWSEIAEHVATKTKAQCMLHFLQMPIE
DSFLEGEGDANETAQERKDTSADREATALTAPDKMEVESKVEEKVSSEISASEKTEDESI
GRKNEPDDLSVPGTKDVKNSASGDPSISSNGDAVEKKESADIETSAEGSTNIAIDALRSA
FQAVGYFPEKGNSGSFAEAGNPVMALAAFLAGLLEHDNAITSCRSSLKAILEESPSVQLA
TRHCLILEDPPSDVQNPPAFVSSAANIGDEESHKDDIQMPDLDVTDKVKVCEEKNEENTT
SLEKEIKPSASSETCPEMPAAKESCEVPSLEATTNTTKDSSGLILSEEKNTSNNPKDVKD
ASLTTAVPPDNGEEKLDLVSKEVVESSDKEMNDSKPVGEDKPSNAKELGDLDSDKVQLDV
LKADETMATSTAMEEQESKQTDGAGSLLQDREKADDGTKKEAISNDVKNSNSTESHDDHT
INRLKRAAATAISAAAVKAKLLAKQEEDQIRHLVSLIIQKQLQKMEAKLSFFTDIENVIM
RVREQTDRTRQRLLHERSQIIAARLGLPTPSFRPNPSSIPTSRFATGYGMAGPKPLNMVS
QKPPAMRRP
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggaagccaaaccccgtgaggcctcggtgcctctggccgtcggcccgtcggcgcgtcca
cctccacctacagaaaccctaccagagcctccccggagaagaggcggcgccgctaagagg
aaagcagcctccgccggcctctcctccacctcctctccctcctctttagctccctcctcg
aagcgcctcgccaaggagagaaaccctatccagtaccatctgcccccgatccacaacggt
ccctgcacgcgagctcgccaatcccccaacaagttcgccgttgccgccctacagaagcca
ccggggacggggctctcaccattttcggcggcggatggcggggggaatgggacggccgtc
gtcggagatccggccggtggtggcgaggaggagatggcggaggagccgctcgtggatgca
gagttcgaagctgttcgatctcgaggcgtcaatgttcatgtgatccctacttttgctgga
tggttttcatggaaggaaatccaccaaattgagaagcaatccctggattcattttttaat
gggaagtcagagaaaagaacgcctgagatttacttggaattacggaattcaatcatgaag
aagtttcatgctgacccgaaggtgcaagtggaacttaaagatttagctgagctttctgtt
ggtgatacggatgctagacaagaggtcatggaattcttggatcactggggtttgatcaat
ttccatcctttcccaccttctgagcatgacaagagcaaatctggtactgatggcggagat
aaaacaccctctttgttagacaaattgtatcagtttgagatagttcaatcatatattcat
tcggttccaaaaagggcagagccatctataacatctacaatgccttgctttcttcgcgag
tctgccttatctgatgatttggttactcttgtggagccttcggttgaataccactgtaat
tcttgctcagctgattgttcacgtaagcgctatcattgccagaagcaggcagattttgat
ttatgttcagactgctacaatgaggggaagtttggtacaggcatggcaacagctgatttc
attcttatggaacctgcagaggctgctggtgctagtggagctagttggacagatcaggag
accctgcttcttttagaagctttagaactatttggagcaaattggagtgagattgctgaa
cacgttgccacgaaaacaaaagcccaatgtatgttacacttccttcaaatgcccatcgag
gattcttttctggaaggtgagggtgatgctaatgaaactgcccaggaaagaaaggatact
tctgcagatagagaagctactgctttaactgctcctgataaaatggaagttgaaagcaaa
gtagaagaaaaggtgtcttctgaaattagtgcttctgaaaaaaccgaagatgaaagcata
ggaaggaaaaatgaaccagatgatttaagtgttcctggaactaaagatgtcaagaactca
gccagcggagatccgtctatatcttccaatggagatgctgtagaaaagaaagagtctgct
gatattgagacttctgctgaaggttctacaaacattgctattgatgcactaagatctgca
tttcaggctgttggctactttcccgagaaaggaaactcaggttcatttgcagaagcagga
aacccagttatggcattggcagcttttttagcaggtctgttggaacatgacaatgctatc
acttcatgccgtagttcactgaaggccattctggaggaatctccttccgtccagcttgct
actaggcactgccttattcttgaagatccaccaagtgatgtgcaaaatccacctgccttt
gtgagttccgctgcaaacattggcgatgaggagtcacacaaagatgacattcagatgcca
gatttggatgttactgataaggtgaaggtctgtgaagaaaagaacgaggaaaatactact
tctcttgaaaaggaaataaaaccatctgcttcatcagaaacttgtcctgaaatgcctgct
gcaaaggaatcatgtgaagtgccttctttggaggcaacaaccaacaccactaaagattcc
agtggtctgatattgtcagaggagaaaaacacatctaataatccaaaggatgtgaaagat
gccagtttgactactgctgtgccaccagataatggggaagaaaaattagatttagtgtca
aaagaagtagtagaaagctcagacaaagaaatgaatgattcaaagcctgtgggggaggac
aaaccaagcaacgcaaaggaattaggtgatttagattcagacaaggttcaattagatgta
ctaaaggctgatgagacaatggctacttcaactgcaatggaagaacaggagtccaagcaa
acagatggagcaggatcattattacaagatagagagaaagcagatgatggcactaaaaaa
gaagcgatcagcaatgatgtcaaaaactccaactcaactgaaagccatgatgatcatacc
ataaataggttaaaacgtgctgcagctactgctatttcagctgctgctgtgaaggctaag
cttcttgcaaagcaagaggaggaccaaatccggcatcttgtctctttgattattcagaag
cagcttcaaaaaatggaggctaaattgtcatttttcactgacattgaaaatgtgattatg
cgggtgagagagcaaacggacagaactagacagagacttctacatgagcggtcacaaata
attgctgctcgattgggtctccccacaccgtcttttagacctaacccatcatccatacct
acaagcagatttgccacaggttatgggatggcaggcccaaagccacttaacatggtctct
caaaaaccaccagctatgagaaggccctga
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integrated database retrieval system
