KEGG   Typha angustifolia (narrow-leaf cattail): 140774178
Entry
140774178         CDS       T11061                                 
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
  KO
K10839  UV excision repair protein RAD23
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03420  Nucleotide excision repair
tang04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    140774178
  09124 Replication and repair
   03420 Nucleotide excision repair
    140774178
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:tang03051]
    140774178
   03400 DNA repair and recombination proteins [BR:tang03400]
    140774178
Proteasome [BR:tang03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    140774178
DNA repair and recombination proteins [BR:tang03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      140774178
SSDB
Motif
Pfam: XPC-binding UBA ubiquitin Rad60-SLD UBA_7 CUE UBA_RAD5A Phasin_2 TECR_N UBA_3 Dsc3_N
Other DBs
NCBI-GeneID: 140774178
NCBI-ProteinID: XP_072973163
LinkDB
Position
13:complement(join(17363150..17363272,17363464..17363542,17363615..17363724,17363797..17363844,17363917..17363985,17364068..17364217,17364795..17364969,17365443..17365508,17365601..17365674,17365919..17365972,17366303..17366464,17366836..17366901))
AA seq 391 aa
MKIFVKTLKGTHFDIDANPEDAVADVKKSIESVQGQSVYPAAQQMLIHQGKILKDDTTLQ
DNNISENSFLVIMLMKTKGSGSGASTASAIPSNQVSPVSSGIPTPAPAPAAASAATVAPR
VHPTISAPSTTVTSDSGATVFNEVAYGQAASNLLAASNLEQTIQNILDMGGGTWDRGTVV
RALRAAYNNPERAIDYLYSGIPEHEEAPPVASAALTGQRIGTPVEAPEPSQPTVPSSGPN
ANPLNLFPQQGLPSTDSGTGVGSLDFLRSSPQFRALQALVQANPQVLQPMLQELGKQNPQ
VMRLIQEHQAEFLRLINEPAEGEERNLLGQLADAVPQALTVTPEERDAIDRLEAMGFEQS
LVLEVFFACNKDEELAANYLLDHMHEFEDDQ
NT seq 1176 nt   +upstreamnt  +downstreamnt
atgaagatcttcgtgaagactctcaagggcacccacttcgacatcgacgccaatcccgag
gacgccgttgctgatgttaaaaagagtatagaatctgtgcaggggcaaagtgtgtaccct
gctgcacagcagatgttgatacatcaagggaaaattcttaaggatgacacgactttgcag
gataataatatttctgaaaatagttttctcgttataatgttgatgaagactaaaggttca
ggcagtggagcttcaaccgctagcgccatacctagcaatcaggtctcacctgttagttct
gggattccaacaccagcacctgccccagctgcagcatctgcagcaactgtagcgccgaga
gtgcatccaactatatctgctccaagtacaacagttacatcagattctggtgctactgta
ttcaatgaggttgcctatggtcaagcagcatcaaatctacttgctgcaagcaaccttgag
caaactatacagaacattcttgacatgggtggagggacttgggacaggggcactgttgtc
cgtgctttacgtgctgcatataacaatcctgagagggctattgactatttgtattctggc
atccctgagcacgaagaagcaccacctgtggcctcagccgccttaactggacaaagaatt
ggtaccccagttgaggctcccgaaccatcccagcctacagttccttcaagtgggcccaat
gctaatcctctgaacctatttcctcagcagggccttcccagcacggactcgggtactggt
gtaggcagccttgatttcctccgtagtagtccacagtttcgagccttacaggctttggta
caggcaaatcctcaagtacttcagccaatgcttcaagaactagggaaacaaaaccctcag
gtgatgcggctcattcaggagcatcaagctgaatttcttcgcttgatcaatgaaccggct
gagggagaagaaagaaatctgctaggccagttagcagatgccgtgcctcaagcattgaca
gttactccggaggagcgtgacgctattgaccgacttgaggcgatgggcttcgagcaatcc
ctcgtgttggaggtcttctttgcctgcaacaaggatgaggagctggcggcaaactacctt
ttggaccacatgcatgagttcgaagatgatcaatga

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