Typha angustifolia (narrow-leaf cattail): 140774606
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Entry
140774606 CDS
T11061
Name
(RefSeq) zinc finger CCCH domain-containing protein 46
KO
K14321
nucleoporin-like protein 2
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
140774606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tang03019
]
140774606
Messenger RNA biogenesis [BR:
tang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
140774606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_2
zf-CCCH_DUS3L
zf-CCCH_PARP12
Torus
zf-CCCH_PAN3
zf-CCCH_UNK
Motif
Other DBs
NCBI-GeneID:
140774606
NCBI-ProteinID:
XP_072973772
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All DBs
Position
13:complement(join(5833305..5833340,5834610..5834673,5836070..5836256,5837443..5837546,5837708..5837925,5838349..5838442,5838659..5838754,5838872..5838969,5842085..5842292,5843221..5843264))
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AA seq
382 aa
AA seq
DB search
MNRRQEPCRNFLRGSCKYGAQCKFAHVSQQQSRPNVFGFGSQGTSPFAQTSQQQKPNPFG
FGVQNNSQLKGESNYGSKYQSPAKPFENKWTRSSSLASANATSSKQTDAQLQAAVHTCTD
PESCKRQIAEDYKNEAPLWKLTCYGHRKSGPCDIVGDVSFEELRALAYEDARKGLSFQSI
VERERNLLNSKLVEFDNLLRNPSVSQSSKLPVTSLFPGAKSTTSIGGSQSSTPPSFSSFS
QIAAATNLGSGLRTPAQGTPDTTFGQPSFFQKTSQTPGGSEMKFGTPGTFGQPMPNQPSG
GLPGYNFNNSAKATGNDQLPFSLSPTQFNQSSSFLDKPIVSSTVHQAFSGEQQEEGQDDS
IWLKEEWAIGEIPEREPPMRYC
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgaaggcaggagccctgtagaaactttctgcgcggcagctgtaaatatggagca
caatgcaaatttgcacatgtgtctcaacagcagtcgaggccaaatgtgtttggatttggt
tcccaaggaacctcaccttttgcacagacaagtcaacagcaaaagcctaatccttttgga
ttcggggtgcaaaacaactcccagttgaaaggtgaatcaaattatggttctaaatatcag
agtccagctaagccttttgaaaataaatggactcgatcgtcctctttagcctcggcaaat
gcaacttcttcgaaacaaactgatgcacagcttcaagcagctgtccatacatgcactgat
cctgaatcctgcaagcgtcaaattgctgaagattataagaatgaggcacccctttggaaa
cttacttgttatggccataggaaaagtggtccatgtgacattgttggtgatgtcagcttt
gaggaacttcgagcacttgcgtatgaagatgctaggaaagggctcagttttcagtccatt
gtcgaaagagagagaaacctactgaattccaagttggttgaatttgataatttgctccgc
aatccctctgtatcgcaaagttctaaacttcctgtgaccagcctatttcctggagccaag
agcaccacatcgatagggggttctcaaagtagtacaccaccttcattttcaagttttagt
caaattgcagctgcaactaatcttggatctggcttaaggacccctgcacaaggaacacct
gataccacttttggtcagccaagcttttttcagaaaaccagccaaactcctggaggatcg
gagatgaaattcgggacaccaggcacatttggtcagccgatgccaaaccagccatctgga
ggtttaccaggctacaactttaataacagtgccaaggctactggaaatgaccagcttcct
ttctctctcagcccaacacaatttaatcaatcatcgagctttcttgacaagccgatagtt
tcaagtacagttcatcaggcatttagcggggagcagcaagaggaaggtcaagatgacagt
atctggctaaaggaagaatgggcaattggagagatacctgaacgagaaccacccatgaga
tactgttaa
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