Typha angustifolia (narrow-leaf cattail): 140774894
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Entry
140774894 CDS
T11061
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
tang Typha angustifolia (narrow-leaf cattail)
Pathway
tang03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140774894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tang03021
]
140774894
Transcription machinery [BR:
tang03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
140774894
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
WHD_SOWAH
zf-C3HC4_3
DZR_2
ELL
WHD_Rad26_CSB
DUF1258
Motif
Other DBs
NCBI-GeneID:
140774894
NCBI-ProteinID:
XP_072974176
LinkDB
All DBs
Position
13:complement(join(3099107..3099196,3100477..3100689,3100801..3101019,3101382..3101510,3103438..3103553,3103927..3104294,3104604..3104755,3105424..3105582,3106367..3106537))
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AA seq
538 aa
AA seq
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MSTDLVLKPSCEGCGSTSDLYGSNCKHTTLCLSCGKSMAHNRARCLLCGAPITNLIREYN
VRASTSADKAFSIARFVTGLPPFSKKKSAENKWSLHKEGLQGRQVTDALREKYKNKPWIL
EDETGQHQFQGQLEGSQSSTATYYLLMLHGKEFIAIPAGSWYNFSKIAQYKQLTLEEAEE
KMNKRKHNATGYERWMMKAATNGAAAFGEVKKTEDISVGGAEGNRTKKGKSNEDGDHSDK
GEEDEEEEEARKNRLGLNKKPIDDDEEGGKGGDIDLDDDDIEKGDDWEHEEIFTDDDEAV
GNDPEEREDLAPEIPAPPEIKQDEEDEDEEEEGGLSKSGKELKKLLGRAAGLNESDAEDD
DDEDDEDEVGTSPVLAPKQKETPKDEPTENSPSKPAPPSGSARSTPSVSKSSKGKRKPGN
DEAKPTNGAPSKKVKVDSDSRPSGGKDETPSSKSTVPPKASASTATRTGTASSAAPVTED
EIRTVLLSVAPVTTQDLVARFKARLKSQEDKSAFADILRRISKIQKTNGHNYVVLREK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggatctcgtgctgaaaccctcgtgcgagggttgtggatcgacgtcggatctc
tacgggagcaattgcaagcacacaactctttgcctctcttgcggcaaatccatggctcac
aaccgcgctcgatgccttctctgcggcgctcccatcaccaatctcatcagggagtataat
gtccgggcaagcactagtgcagacaaggccttctctattgctagatttgtcactggcttg
ccacctttttcgaagaagaagagtgcagagaataaatggtctcttcacaaggaaggcctt
caaggacgacaagtcactgatgctttgcgggagaagtacaaaaataagccatggattttg
gaagacgagactgggcagcatcagtttcaaggccagcttgagggatcacaatcatcaact
gctacatactatttgctaatgttgcacgggaaggagttcattgctattcctgctggttcc
tggtacaacttcagcaaaattgcgcagtacaagcaattgaccttagaagaagctgaagag
aaaatgaacaagaggaagcataatgcaactggatatgaaagatggatgatgaaggcagca
actaatggagctgctgcttttggtgaagtaaagaagactgaagacatcagtgttggtggg
gcagagggtaatcgtactaaaaaaggaaaaagcaatgaagatggagatcattctgataag
ggtgaggaggatgaggaggaagaggaagcaaggaaaaataggcttggactcaataaaaag
ccaattgatgatgatgaggaaggtggaaaagggggtgatattgatttggatgacgatgac
atagaaaagggtgatgactgggagcatgaagaaatcttcactgatgacgatgaagctgtg
ggcaatgatccagaggaacgggaagatttagctcctgagattcctgctccgccggaaatt
aagcaggatgaagaggatgaagacgaagaagaagaaggtggtctgagtaagtccggaaag
gaattgaaaaagctgcttggacgagctgctggactaaatgaatcggatgctgaggatgac
gatgacgaagatgatgaagatgaagtcggcacatcccctgtgcttgccccaaaacaaaaa
gaaacacccaaagatgaacccacagagaacagcccctcaaagccagcacctccatctgga
tctgctcgtagtactccatctgtatccaaatcatcaaagggaaagaggaaacctggaaat
gatgaggcgaaacctaccaatggtgcaccttcaaagaaggtgaaggtggatagcgactca
agaccatcaggtgggaaggacgagactccttcctccaaatcaactgtacccccaaaagca
tctgcttcaacagctactcgaactggaacggcatcttctgcagctcctgttacggaggac
gaaatcaggactgttctactttcagtggctccagtgacaacacaggacttagttgccaga
ttcaaggctagactaaaatcccaggaggataagtctgcttttgcagatattctgaggagg
atatctaaaatccagaagaccaatggtcataactatgtcgtgttgagagaaaaataa
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