Typha angustifolia (narrow-leaf cattail): 140775077
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Entry
140775077 CDS
T11061
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tang03009
]
140775077
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
140775077
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
NBCH_WD40
Beta-prop_TEP1_2nd
EIF3I
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
WDR54
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_IFT140_1st
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
140775077
NCBI-ProteinID:
XP_072974427
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Position
13:2856485..2857681
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AA seq
398 aa
AA seq
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MASSQTEIVLTSSPDRPITAHDPVSGAVLAQFFGTGIPRGGLTVAGNALIAASHVSPTTA
GSVRLYNWWSSAATHRVPTPEPVAPLVATPDGSHLFAGGLSGRIHVFSLPSGDLRCSFFA
HGRAVSCLAVNGDGSLLLSGGDDGTVAVFPILSLLDVACMQDKDEDSWNHLALYQFKAHN
SPVTCIASGTGGCNPAVVSSSLDGTCKLWSIANGSKLRTITFPCAMWCVTMDSTSYNLYA
GGSDGKLYVVPLKARGGRLKEKGGHEMVAWGAEHCGAVTSLAMLDGDRKAVSASEDGIVR
IWDVKNGLLDQAFASGGGDLVVARWVGRVIRGGESGNGAGFSEREMGRKVSEMMKMDEWL
HATREDRRRAIEMLETTLDTYRRMLLLLIREAEAKEIE
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcatcctctcagacagagatcgtcctcaccagctctccagacaggcccatcacggcc
cacgaccctgtctccggcgccgtgctcgcacaattctttggtacaggcatcccccgcgga
ggcctcaccgtggccggcaacgccctgattgccgcttcgcatgtatcacccaccactgcg
ggctctgtcaggctctacaattggtggtcgtccgccgccacgcaccgcgttccgacccct
gaacctgtagcgcccctcgtcgcgactccggacggctcccacctttttgccggcggcctt
tctggtcgtatccacgttttctctcttccctcaggcgatctccgatgctctttctttgct
cacgggcgagccgtctcgtgtctggccgtcaacggcgacggctcccttctgttatcagga
ggagacgacggcaccgtagcagtcttccccatacttagtcttttagacgttgcatgcatg
caagataaagatgaggactcttggaaccatctcgcactctaccagttcaaagcacataat
tctccggtgacgtgcatcgcctcggggaccggcgggtgcaaccccgccgtcgtctcgagc
tcgctcgacggcacctgtaaactctggagcatcgcaaacggcagcaagctgagaaccatc
acatttccttgtgcaatgtggtgcgtgactatggactcaaccagttataacttgtacgcc
ggtggctcggatgggaaactatacgtagtgccattgaaggcaagaggaggaaggttgaaa
gaaaaaggaggtcacgagatggtcgcatggggagcagagcattgcggcgcggtgacatca
ttggcgatgttagacggcgatcggaaggcggtatcagcgtcggaagacggaattgtgagg
atatgggacgtgaagaatggactgctagaccaagcgttcgcaagcggcggcggcgatctg
gtggtggcgagatgggttggtagagtgatcagaggaggtgaaagtgggaatggtgctggg
ttttctgagagggagatggggagaaaggtgagtgagatgatgaagatggatgaatggctg
catgcaacgagggaggacaggagaagggcaatagagatgcttgagactacattggatacg
tacagaaggatgttgctgctgctcatcagagaagcagaagctaaagaaattgagtga
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