KEGG   Typha angustifolia (narrow-leaf cattail): 140775417
Entry
140775417         CDS       T11061                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K06100  symplekin
Organism
tang  Typha angustifolia (narrow-leaf cattail)
Pathway
tang03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tang00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140775417
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tang03021]
    140775417
   03019 Messenger RNA biogenesis [BR:tang03019]
    140775417
Transcription machinery [BR:tang03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     140775417
Messenger RNA biogenesis [BR:tang03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     140775417
    U7-dependent histone pre-mRNA processing factors
     140775417
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N HEAT_EZ HEAT_2 QSOX_pErv TPR_DNAAF5
Other DBs
NCBI-GeneID: 140775417
NCBI-ProteinID: XP_072974796
LinkDB
Position
14:complement(join(937696..937840,937935..938038,938684..938767,938860..938904,939286..939357,939447..939524,939610..939705,940844..940918,942545..942592,942676..942756,943144..943251,943357..943419,943545..943688,945092..945232,945317..945364,946231..946476,946551..946667,947263..947331,948361..948966,949109..949645,949786..949911,951188..951359,952188..952350,952485..952596,952681..952773,953986..954145,954829..955031))
AA seq 1311 aa
MTAAMTTTSSWGERAAGSPSEIPSKLKQLRQLKEVIFHGDPMLLPRFVPRLAELKADKAS
PVRKLVAEMIGDIGVKHMELLPETIPCLISFLNDETPAVARQAITSGTYLFRRVLEKVVI
QGLYSSEIDDSLKLSWEWMLKFKSSVLAIAVQPSCNGVKLLAIKFVEAMVLLYTPDPNIS
SDPPNENNDGSEFNILWLRGGHPLLNMGDLAMEASQSLGLLLEQLRLPQVKSLGTSMTIV
LINSLSAIAQKRPSFYGRILPALLCLDPASSIIRVRIPGAHHALKNAFVGFLKCTHASAE
PWRARLLEALKAIDAGELAEQTAELSKSSGGQSFSTEEALPTRDNNISLQACEEASSDHG
RKRHMIEEISDVLEDDAVSGKRIRKTITLGRESVNGTIQSTPDSVGVPSVSSVAFRDGNS
EAVHQLVSMFGALAAQGDKAAGSLEILSSSISSDLLAEVVMANMQHLPSACPREDGVEEC
IAGRGYSSGLVGDSLPPLQPSALTSDNITLSSSFPLIASLLKKIYQSDGEQVLSNAEATL
VTSVAGAGTGIQAVSVSFNASNLLVSAVEEDSKSALPLDLETSESKIPGLACTSLLDEIQ
ESSEASHTSNSKWQETSTVPNVSLVSTLPSDVTSTDYLATHPSEAQSPRLTVSDASQAPS
SASVVVNSQYVLPKLHVTNINLSDEDKDFLQKEAFVRIINADKQVAVSAGSHARFPLLAH
LGVEFPLALDAWELLQKHVLSDYMNHEGHELTLRLLYRLYRETEQDQDFFSSRTAMSVYE
NFLLTVAEALRDKFPASDKSLGRLLGDAPYLPEGILKLLQGLCSPESREKYDKDLQSGDR
VTQGLSAVWGLILQRPSNRDRCLLIALQSAVHPVEEVRMKAIRLVANKLFPMASISEKIE
AFASEKLESILNVIPAMELADVGGSALGVQKKLLQEGDLEKSNDGSEHTSDSQLAKSTIS
SSIAEAQRCMSLYFALCTKKHSLLRQIFAIYRSIPEAAKQAVHRHIPILIRTIGFSSELL
GIISDPPDGSEGLIMQVLQTLTDGANPSQDLISSVKKLYSKLKDVEILIPILTFLSKDEI
LPVFPNLVKLPLDKFQVALSCMLQGSAQSGPCLTLSEVLIAIHRIDPEKEGIPLKKVIDA
CSVCFEQKVFSQQVLAMALNQLVEQTPLPLLFMRTVIQAIGVFPALVDFVMEIMSRLVSK
QIWKYPKLWVGFLKCCIQTKPQSYSVLLQLPAPQLENALNRNPQLKPSLVDHASQPNIRT
TLPRSTLVVLGLLQDSQASGQAQTSQSQVADTSSSAADVATEVTQESTAIS
NT seq 3936 nt   +upstreamnt  +downstreamnt
atgacggcggccatgacgacgacatcgagttggggcgagcgggcggcgggttcacccagc
gagatcccttcgaagctgaagcagctgcggcagttgaaggaagtaatatttcacggcgac
ccgatgcttctccctcgtttcgtgccccgactcgccgagttgaaggccgataaggccagc
cccgtgcggaagcttgtcgccgagatgattggtgatattggagtgaagcatatggagctt
ctacctgaaacaataccttgtcttatatcctttttgaatgatgaaacccctgcagtcgct
cggcaagccattacaagtgggacttatttatttcgtagagtattagaaaaggttgttatt
cagggtttgtactcaagtgaaattgatgactcactaaaattatcatgggagtggatgctt
aagttcaaaagttcagttctagctatagcagtccagcctagttgcaatggagttaagtta
ttggcaattaagtttgtggaagcaatggttcttttatatacgcctgatcccaacatttct
tcagatccaccaaatgaaaacaatgatggatcggagtttaacatattgtggttaagagga
ggtcatcctttgctcaacatgggagatcttgcgatggaggccagccagagcttggggtta
ttgcttgaacagcttaggctcccacaagtgaaatcccttggcacttcaatgactattgtg
ttaattaacagtctctcagctattgcccagaaaagaccttccttttatggacgtatattg
cctgcattactctgtttggatccagcaagttctatcatcagagtgcgaatccctggtgct
caccatgccctgaagaatgcctttgtgggatttctgaaatgtacacatgcaagtgctgaa
ccgtggcgtgcacggttgctagaagctctaaaagctattgatgctggtgagttggcagaa
cagacagctgagctcagtaagagctctggaggccaatcttttagtacagaagaagcttta
ccaacaagagacaacaatatatcattgcaagcatgtgaggaggcaagcagtgaccatggg
cgtaaaagacatatgattgaagaaattagtgatgtattggaagatgatgccgtttctggt
aaaagaattaggaaaacaataacattaggtcgggaaagcgtgaacgggacaattcaatca
actcctgattcagttggcgtaccttctgttagttctgttgcttttagagacggaaattct
gaagctgtacatcaactagtcagtatgtttggtgcattagccgcccaaggcgacaaagct
gctgggtcattagagattctctcttcaagtatttcctctgacttgctagccgaggtggta
atggctaatatgcaacaccttccatcggcttgtcctagagaagatggagtggaagaatgc
attgctggtaggggatattcctctggtctggttggcgacagtctgcctcctctacagcca
tctgcactcacttcagataatattaccttgtcaagttcatttcctctgatagcatcacta
ttaaagaaaatctaccaaagtgatggagagcaagtattatcaaatgctgaggcaactctt
gtaacttctgttgctggtgctggtactggtattcaagcagtatctgttagttttaatgct
tccaatttactggtttctgctgttgaagaagatagtaagtcggctcttccattagattta
gaaacatcagagagtaaaatacctggtctggcttgtactagcttgttggatgaaatccaa
gaatcatcagaagcttctcatacttctaattctaagtggcaagaaacaagtacagtgcct
aatgtcagtttagttagtacattaccttctgatgttacttcaactgactacttggctaca
catccttcagaagcccagagtccaagattaactgtttcagatgcaagccaagcaccctct
tcagcttctgttgttgttaattcccaatatgttctaccaaagttgcatgtgactaacatc
aaccttagtgacgaagacaaagattttctacagaaagaggcttttgtgcgaattattaat
gcggacaagcaagtagcagtttctgctggatcacatgcccgttttcccttgcttgctcac
ctgggtgttgagtttccactggcattggatgcatgggagcttctacaaaagcatgttctg
tctgattatatgaatcatgaggggcacgagttgacattgcgtctcctgtacaggttatat
cgggagacagagcaggaccaagacttcttttcatccagaacggctatgtcagtttatgaa
aattttctcctgactgtggcagaagcccttcgtgacaaatttccagcctcagataaatca
cttggcaggttgcttggcgatgcgccatacttacctgaaggcatattgaagctgttacag
ggcttgtgttctcctgagagtcgcgagaaatatgataaggatttacaaagtggtgaccga
gttactcaaggtcttagcgctgtttggggtcttatcttgcaaagaccttcaaatcgagat
aggtgcctcctgattgctttgcagagtgcagttcatcctgtggaagaggtgcgaatgaag
gcaattcgactggtagcaaataagttatttcccatggcaagcatttcagagaaaatcgaa
gccttcgctagtgaaaaacttgagtcaatattaaacgtcattcctgcaatggagttagcg
gatgtgggtggatctgcacttggagtgcaaaagaaacttctgcaggagggtgacttagaa
aagtccaatgatggtagtgaacatacttctgatagccaattagccaaaagtacaatatcc
tcttcaatagcggaggctcagcgttgcatgtcattgtattttgccctatgcacaaagaaa
cattcccttctccgacaaatctttgcaatttacaggagcattccagaggctgcaaagcag
gcagttcaccgccatattcccattctgattcgtactataggcttctcatctgaactcctt
ggaattatctcagatccaccagatggaagcgaagggctcatcatgcaggttttgcagaca
ctgacagacggggcaaacccttctcaagatctgatttcttctgtaaagaaattatattct
aaattgaaggatgtggaaattctcattccaatattaacatttctgtctaaagatgagatc
ctccctgtcttccccaatcttgtcaaacttccactggacaagttccaagttgctctctct
tgtatgctgcagggatcagcgcagagtggcccttgcctcactctttctgaggttttaatt
gctattcatcgaattgatcctgagaaagaaggaattcctctaaaaaaggtaatcgatgct
tgctctgtttgctttgagcaaaaggtcttttcccaacaggttctagcaatggcgttaaat
caattggttgaacagacacctcttccgttattattcatgcgaactgttattcaagcaata
ggtgtattccctgctctggtagattttgtgatggagattatgtcacggcttgtaagcaag
cagatatggaaatacccaaagttatgggtgggattcttgaagtgttgtattcagacaaaa
cctcagtcttatagtgtgctgctgcagctaccagctccgcaactagaaaatgcattgaac
agaaatccacagctgaagccttctttggttgatcatgctagccagccaaacatacgcaca
actcttcctaggtctaccctggtagttttaggactgctgcaagattcacaagcttcaggc
caagcgcagaccagccaaagtcaggtagcagatactagtagctctgctgcagatgttgcc
acagaagtaactcaagaatctactgctataagctaa

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