Typha angustifolia (narrow-leaf cattail): 140775454
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Entry
140775454 CDS
T11061
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
tang Typha angustifolia (narrow-leaf cattail)
Brite
KEGG Orthology (KO) [BR:
tang00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tang03041
]
140775454
03009 Ribosome biogenesis [BR:
tang03009
]
140775454
Enzymes [BR:
tang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140775454
Spliceosome [BR:
tang03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
140775454
Ribosome biogenesis [BR:
tang03009
]
Eukaryotic type
90S particles
Helicases
140775454
Pre-60S particles
140775454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140775454
NCBI-ProteinID:
XP_072974854
LinkDB
All DBs
Position
14:complement(join(9464778..9465018,9465653..9465822,9467362..9467493,9469172..9469385,9473088..9473275,9475614..9475808,9476184..9476761,9477236..9477599))
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AA seq
693 aa
AA seq
DB search
MLARTPQSTFLDGVVGISQAPPGPPRRFLLLGRSWSIARTTTTSSSTDGKREVMASARGR
RFERVPLETAGAYELVDKESGEKVIVWGGADDDVRESPVPSDEVLSWSPRSRKEEEKENE
KDAFDATGVEMNAAVAEFGAKPTGRLGQSVGSFGRLKAQKIKSLIRRSARISKESTNYNR
GRQAGNIPFDGADHIEPFDLNSGKTSLGFSQQEELNNNANNERVRDTHTLHVEPEEYTRA
ANVGMPASKVSSSTKGWGDAGSDKYTTLGRQYQQRKTSVDSGFFSRKSFKDLGCSDDMIK
SLGNLRFLRPSHIQALAYQPVLEGKSCIIADQSGSGKTLAYLAPVIQCIRQEELLGISKS
SSGSPRVIILTPTAELSSQVLNNCRSISKGGVPFRSMVATGGFRQKTQLDSLQQELDVLI
ATPGRFIYLLQEGFLQLTNLKCIVLDEVDILFGDEGFEQVLQRLIDSAPVSAQYIFVTAT
LPVDIYNKVVGVFPDCGVIMGPGMHRTSSGLEEVLVDCSGDDREEKNPDTAFLNKKSALL
RLVDESPVPKTIIFCNKIETCRKVENMFNRFDRKGEDIKVLPFHAALAQEMRLANLKEFH
SGSTDPMFLICTDRASRGIDFSKVDHVVLFDFPRDPSEYVRRVGRTARGAGGRGKAYVFV
VGKQVPLARRIIERNKKGHPLHDVPCSYENSVL
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgagaactccacagagcactttcctcgatggtgtcgtcggaatttcccaagcc
cctcccggtcccccccgacgcttcctccttcttggccggagttggtcgattgcaagaact
actactactagtagtagtaccgatgggaagagggaagtaatggcgtcggcgagaggtcga
aggttcgagagagttcccttggagaccgccggcgcatacgagctcgtcgacaaggagagc
ggcgagaaggtcatcgtctggggcggcgccgacgacgacgtccgcgaatcccccgtgccg
tccgacgaggtcctctcttggagtcctcgctctcgcaaggaggaggagaaggagaacgag
aaagatgcttttgatgccacaggagttgagatgaatgcagctgttgctgagtttggtgct
aaaccaacaggacgtcttggtcaatctgttggaagttttggtagattaaaggctcaaaag
ataaaatcactaatcagaagatcagcacgaatcagtaaagaaagcactaattataacagg
ggccggcaagctggtaatattccttttgatggtgcagaccatattgaaccttttgatctt
aacagcggaaagactagtttgggcttttcccaacaggaagaattaaataacaatgcaaac
aatgagagggttcgagatacacacactctgcacgttgaacctgaagaatacacacgagct
gctaatgtcggtatgcctgcttcaaaggtcagttcttccacaaaaggatggggagatgct
ggttctgacaagtatactactcttggccgccaatatcagcaaaggaaaacatctgttgat
agtggatttttcagtaggaagtctttcaaggatcttggttgcagtgatgatatgatcaaa
tctctggggaatctgaggttccttcggccatcacatattcaggctttggcatatcagcct
gtcttagaggggaaaagttgcataattgctgatcaaagtggatctggcaagacattggca
tatttggccccagttatacaatgcataagacaagaggaactactagggatttctaaatca
tcatcagggagtcctagagtaataatattgacacctactgctgaactgtcttcccaggtc
cttaacaattgccggtccatatcaaagggcggggtcccctttagatctatggttgcgaca
ggtggttttcgacagaaaactcagttggatagtcttcaacaagagctagatgtgctcata
gcaacacccggccgttttatttatttgcttcaagaaggatttttgcaattaactaatctc
aaatgtattgtgttagatgaggtcgacatcttatttggtgatgaaggctttgagcaagtt
cttcagcgtttaattgattctgcaccagtgtcagcacaatatatttttgtcactgctact
cttccagtagacatctacaacaaggtggtgggagtatttcctgattgcggagtaatcatg
ggacctggcatgcaccgaacaagctccggccttgaagaggttctggtggactgcagtgga
gatgacagggaagaaaaaaatcccgatacagcttttttgaataagaaatctgctcttttg
cgacttgtagatgaatctccagttcctaaaactattattttctgcaataagattgagacc
tgcagaaaggttgagaacatgttcaacagatttgataggaaaggagaagatatcaaagtt
ttgcctttccatgctgcattagcacaggaaatgcgcctcgcaaacttgaaggagtttcat
tcagggtctacagatcctatgttcctcatctgcactgatagggcgtcgcgaggcatcgac
ttttcaaaagtggaccatgtcgtgctatttgacttccctcgtgatccaagtgagtacgtc
cgtcgcgttgggaggacagctcgtggtgccgggggcagaggcaaggcctacgtgtttgtc
gtaggcaagcaggtccccttggctaggaggataatagaaagaaacaagaagggtcatcca
ttgcatgatgtgccttgttcttacgagaattcagttttgtag
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